|
Name : ECA2739 (ECA2739) Accession : YP_050830.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 3080104 - 3081720 bp Length : 1617 bp Strand : + Note : Similar to Yersinia pestis ABC transporter ATP-binding subunit ypo1270 SWALL:Q8ZGL9 (EMBL:AJ414147) (530 aa) fasta scores: E(): 1.2e-144, 74.85% id in 529 aa, and to Salmonella typhi ABC-transporter ATP-binding protein sty2455 SWALL:Q8Z583 (EMBL:AL627273) DNA sequence : ATGTCCAGTTCACCTTTATTGCAGATAGATGATCTCAGCATTGCCTTCCGCAAAGGCGATCAGGAGCAGCGTGTTGTCGA CCAGCTTTCACTGGCGGTGAATGCGGGTGAGACGCTGGCGCTGGTCGGCGAGTCAGGTTCGGGGAAAAGCGTCACTGCAC TGTCGGTTTTACGCTTGCTCCCTTCCCCACCCGTGGTTTATCCGCAGGGAGATATCCGCTTTGCGGGGCAATCGCTGCTA CATGCCGATGAAAAAACACTGCGTCAGATACGCGGTAACCGAATTGCGATGATCTTTCAGGAACCGATGGTGTCGCTTAA CCCCCTGCAAAGCATTGAGAAACAGCTAATTGAAGTGCTTTCGCTCCATTGTGGCATGCGCACCGAGGCGGCCCGTAGCG AAGTCATCTCCTGTCTGGATCGCGTGGGTATTCGGCAGGCTAAAAGCCGATTGAATGATTTCCCACACCAGCTTTCCGGC GGGGAACGCCAGCGCGTCATGATTGCAATGGCGCTGCTGACTCAGCCCGATTTACTCATTGCTGATGAGCCGACAACAGC ACTGGACGTTACCGTTCAGGCGCAAATACTGAAATTGCTGAACGAGCTGAAGCGGGAAATGGGGATGAGCTTACTGTTCA TCACCCACGATCTGAATATCGTCCGTCAATTGGCGGATAACGTGTCGGTTATGAAATCGGGTAAAGCCGTGGAGCACAAC AGCTGTCAGCAGCTTTTCAGCGCTCCGCAGCATCCTTACACACGCCAATTACTGGACGCAGAGCCATCAGGCGAGCCGCT TCCGGTAGAGGATGACGGTGGCCCCCTCCTGCGGGTGGAGCATTTGCACGTTTCATTCCCTATCAAACGCGGCCTTTTGC GCCGTACCGTTGACGAAAAGCAGGTCGTTAATAATATTAGTTTCACCTTACGGCGCGGTGAAAGCCTGGGTTTGGTAGGG GAATCGGGTTCAGGGAAAAGCACTACCGGATTAGCGCTACTTCGCCTGATTCAATCACGCGGTGATATCTGGTTTGATGG TCAACCCTTGCAAGGGCTAACCCGTAAGCAAATGCTGCCCTTCCGTCACCGGATTCAGGTCGTTTTTCAGGACCCGAACT CCGCGCTGAACCCACGGCTGAATGTGGAGCAAATCATTGCTGAGGGATTGATCGTTCATCACAAATTGAGTAAAGAGGCG CAAGAACAACGCGTGGTGGCGGTGATGCAGGAAGTCGGGCTGGATCCCACCACTCGTTACCGTTATCCCTCCGAGTTTTC CGGCGGTCAGCGCCAGCGTATCGCTATCGCTCGGGCACTAATACTGCAACCGGAACTGCTGATTCTCGATGAACCTACGT CGTCGCTGGACAGAACGGTTCAGGCGCAAATTCTGGCCCTGCTGAAGTCATTACAGGAAAAGCACAAAATCGCCTACCTG TTCATCAGCCATGATTTACAAGTTATCCGCTCACTGTGTCATCAGGTTATCGTGTTACGACAGGGTGAAGTCGTCGAACA GGGGGAGTGTAAACAGGTATTCACGCATCCTGCCGAGCATTACACGCGGGAGCTGCTACAGTTTTCATCTGGCATGACGG AAACGCAATCGGCATAA Protein sequence : MSSSPLLQIDDLSIAFRKGDQEQRVVDQLSLAVNAGETLALVGESGSGKSVTALSVLRLLPSPPVVYPQGDIRFAGQSLL HADEKTLRQIRGNRIAMIFQEPMVSLNPLQSIEKQLIEVLSLHCGMRTEAARSEVISCLDRVGIRQAKSRLNDFPHQLSG GERQRVMIAMALLTQPDLLIADEPTTALDVTVQAQILKLLNELKREMGMSLLFITHDLNIVRQLADNVSVMKSGKAVEHN SCQQLFSAPQHPYTRQLLDAEPSGEPLPVEDDGGPLLRVEHLHVSFPIKRGLLRRTVDEKQVVNNISFTLRRGESLGLVG ESGSGKSTTGLALLRLIQSRGDIWFDGQPLQGLTRKQMLPFRHRIQVVFQDPNSALNPRLNVEQIIAEGLIVHHKLSKEA QEQRVVAVMQEVGLDPTTRYRYPSEFSGGQRQRIAIARALILQPELLILDEPTSSLDRTVQAQILALLKSLQEKHKIAYL FISHDLQVIRSLCHQVIVLRQGEVVEQGECKQVFTHPAEHYTRELLQFSSGMTETQSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-76 | 41 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 1e-76 | 41 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-76 | 41 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-76 | 41 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 5e-88 | 41 |
