Gene Information

Name : kdsB (ECA2554)
Accession : YP_050645.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 2883416 - 2884168 bp
Length : 753 bp
Strand : -
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence : 
ATGACCTTTACTGTGATCATCCCTGCGCGCTTTGCGTCAAGCCGACTGCCGGGTAAACCGCTGGCGGACATCAACGGCAA
ACCGATGGTCGTTCATGTGATGGAACGGGCACAGGAATCAGGGGCACAGCGCGTCATTGTTGCCACCGATCATCCTGATG
TTGAGGTTGCCGTGCGGCAGGCTGGTGGTGAAGTGTGTTTGACTCGCGCCGATCATAATTCTGGCACCGAGCGGCTGGCT
GAAGTCATCGAACGCTATGGTTTTACCGATGACGACATCATTGTTAACGTTCAGGGGGATGAACCACTCATTCCATCCGT
TATCATTCGTCAGGTGGCGGAAAACCTTGCAGCCAGTAAAGCAGGAATGGCGACACTGGCCGTGCCGATTGAAACCAGTG
AAGAAGCCTTCAATCCGAATGCAGTAAAAGTGGTGACCGACGCTGAGGGATACGCGCTGTATTTTTCCCGAGCGACGATT
CCCTGGGACAGAGAGCGTTTTGCTCAGTCGAAGGAAACCATTGGCGATCATTTCCTCCGGCATATAGGTATTTATGCCTA
CCGTGCGGGTTTTGTTCGTCGTTATGTCACATGGGCCCCGAGCCAACTGGAGCAAATCGAATTACTGGAGCAACTACGTG
TGCTGTGGTACGGCGAGAAGATTCATGTTGCGGTTGCCAAAGCCGTTCCTAGCGTCGGTGTTGATACACCAGAAGATCTA
GCCCGTGTGCGACAAGTCATGGCTGGTCAATAA

Protein sequence : 
MTFTVIIPARFASSRLPGKPLADINGKPMVVHVMERAQESGAQRVIVATDHPDVEVAVRQAGGEVCLTRADHNSGTERLA
EVIERYGFTDDDIIVNVQGDEPLIPSVIIRQVAENLAASKAGMATLAVPIETSEEAFNPNAVKVVTDAEGYALYFSRATI
PWDRERFAQSKETIGDHFLRHIGIYAYRAGFVRRYVTWAPSQLEQIELLEQLRVLWYGEKIHVAVAKAVPSVGVDTPEDL
ARVRQVMAGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 2e-33 45
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 6e-33 44
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 5e-33 44