Gene Information

Name : yfeD (ECA2395)
Accession : YP_050490.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2706704 - 2707561 bp
Length : 858 bp
Strand : +
Note : Similar to Yersinia pestis chelated iron transport system membrane protein YfeD or ypo2442 or y1894 SWALL:YFED_YERPE (SWALL:Q56955) (297 aa) fasta scores: E(): 3.6e-84, 76.67% id in 283 aa

DNA sequence : 
ATGACGCTCATTAGCTGGCTAATTGATCCCCTGTCCTATCCGTTCATGCAGCGTGCGCTACTCGCCGCGGTGGTAACCGG
AACCGTTTGTGCAGTCCTGTCCTGTTATCTGGTGCTGAAAGGCTGGTCGCTAATGGGCGATGCCATCTCTCATGCCGTCT
TGCCTGGTATCGTTGTTGCGTTCTTGCTGGGGATCCCCCTGGTTATAGGGGCTTTCGTTTCCGGTATTTTTTGTGCGGTA
GCAACGGGGTACGTGAAAGAACACAGTCGGGTCAAAGAAGATACCGTAATGGGAATTATCTTTTCCGGCATGTTTGCGCT
GGGGCTCGTTATGTTTGCGCGCATCGATACCGATCAGCATCTGAACCACATTCTGTTTGGTAACGTGCTGGGCATCACTC
AGCAAGAACTGACGCAAATATTACTGATTGCTGGGGTGACGCTGGCTATAATCTTGTTAAAACGTCGAGACTTCATGCTG
TACTGCTTCGATCCCAATCATGCCCGAGTCATTGGCCTGCCCGTTAAGCTGCTGCACTACGGGTTGCTGAGCCTGCTGGC
GATGACCATCGTCGCGTCCTTACAGGCCGTCGGCGTTATTTTAGTGATCGCGATGCTGATTGCACCGGGCATTATTGCCT
TCATGATCTGTAAACGTTTCGAGCGCATGGTCCTTGTCGCAACGCTGGTTTCCGTCATTTCTTGTATTGCTGGCACCCTG
ATCAGTTTCTATATTGATGGCGCAACCGGCCCTTGCATCGTCATCGTTCAGGCGCTGTTCTTCACGCTGGCGTTGACTTA
CCACCAGCTTAAACAGCGTCGTCAGGCGGCATCTCAGGCTGTCACCGACGCGCTGTAA

Protein sequence : 
MTLISWLIDPLSYPFMQRALLAAVVTGTVCAVLSCYLVLKGWSLMGDAISHAVLPGIVVAFLLGIPLVIGAFVSGIFCAV
ATGYVKEHSRVKEDTVMGIIFSGMFALGLVMFARIDTDQHLNHILFGNVLGITQQELTQILLIAGVTLAIILLKRRDFML
YCFDPNHARVIGLPVKLLHYGLLSLLAMTIVASLQAVGVILVIAMLIAPGIIAFMICKRFERMVLVATLVSVISCIAGTL
ISFYIDGATGPCIVIVQALFFTLALTYHQLKQRRQAASQAVTDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-68 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-68 51
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-68 51
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-69 51
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-69 51
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-54 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-54 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_050490.1 chelated iron transport system membrane protein BAC0442 Protein 7e-105 78
yfeD YP_050490.1 chelated iron transport system membrane protein BAC0352 Protein 4e-69 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_050490.1 chelated iron transport system membrane protein VFG0528 Protein 4e-69 51