Gene Information

Name : yfeC (ECA2394)
Accession : YP_050489.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2705844 - 2706707 bp
Length : 864 bp
Strand : +
Note : Similar to Yersinia pestis chelated iron transport system membrane protein YfeC or ypo2441 or y1895 SWALL:YFEC_YERPE (SWALL:Q56954) (294 aa) fasta scores: E(): 2.1e-93, 90.03% id in 281 aa

DNA sequence : 
ATGATCGATATCCTGTTGCAGCCATTCAGCTATAACTACATGGTCAAAGCGATCTGGGTCAGCGCGATAGTCGGCGGCGT
GTGCGCGTTTCTTTCCGCCTACCTGATGCTGAAAGGCTGGTCGTTGATGGGCGATGCGCTCTCCCACTCCGTCGTCCCCG
GCGTTGCCGGTGCCTATGCCTTGGGCCTGCCCTACGCGGCTGGTGCATTTTTTACCGGTATGCTCGCTGCACTGGCAATG
ACCCTAATCCGTCACATTACCCGATTACGCGAAGATGCGATTATCGGCTTTATTTTCTCAACGTTTTTCGCCGTCGGTCT
GCTGATTATTTCGCTCAATCCGACATCGGTTAACGTGCAGTCCATCATTTTCGGCAATATTTTGGGCATCGCCGACGAAG
ATGTCCTGCAGGTTGAAATTATTATCGGCGTGACGTTCGTGATTCTCTGCCTGCTATGGAAGGATTTGCTGGCTGTGTTC
TTTGATGAGAACCATGCCCGCTCGATTGGTCTTTCCCCTCTGAAGCTAAAAATTCTGTTCTTTACGCTGCTGAGTGCCTG
TACTGTTGCGGCGCTGCAAACCGTCGGGGCAATTTTGGTCATCGCGATGGTGATTACGCCGGGTGCTACGGCTTATCTGC
TCACCGACCGCTTTGGTCGTCTGGTTGTGATTTCTATTGCACTCGGCGCGATCACCAGCGCGGTAGGCGCGTATCTGAGC
TTCTTCCTTGATGGTGCAACCGGCGGCGTGATTGTCACGTTGCAAACCGTCGTTTTTCTGTTGGCGTTTGTCTTTGCACC
CAAGCATGGGTTACTCGCATCGCGCCGCCTGCGGTTACGCGATCAATCAGGAGATGCATTATGA

Protein sequence : 
MIDILLQPFSYNYMVKAIWVSAIVGGVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAALAM
TLIRHITRLREDAIIGFIFSTFFAVGLLIISLNPTSVNVQSIIFGNILGIADEDVLQVEIIIGVTFVILCLLWKDLLAVF
FDENHARSIGLSPLKLKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFGRLVVISIALGAITSAVGAYLS
FFLDGATGGVIVTLQTVVFLLAFVFAPKHGLLASRRLRLRDQSGDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-75 65
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-75 65
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-75 65
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-75 65
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-75 65
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-41 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-41 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-41 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-41 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_050489.1 chelated iron transport system membrane protein BAC0441 Protein 4e-101 90
yfeC YP_050489.1 chelated iron transport system membrane protein BAC0351 Protein 1e-75 65
yfeC YP_050489.1 chelated iron transport system membrane protein BAC0352 Protein 7e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_050489.1 chelated iron transport system membrane protein VFG0527 Protein 1e-75 65
yfeC YP_050489.1 chelated iron transport system membrane protein VFG0528 Protein 7e-42 42