Gene Information

Name : yfeB (ECA2393)
Accession : YP_050488.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2704954 - 2705844 bp
Length : 891 bp
Strand : +
Note : Similar to Yersinia pestis chelated iron transport system membrane protein YfeB or ypo2440 or y1896 SWALL:YFEB_YERPE (SWALL:Q56953) (296 aa) fasta scores: E(): 1.6e-83, 80.14% id in 277 aa

DNA sequence : 
ATGAGTAGTGATCGAGCAGTACAGTCATTAGAAGTCAATGATGTTTCGGTTACTTACAGCAACGGGCATCAGGCCATTCG
CCACGCCTCATTTTCTTTGGCTGGCGGTACAATTTGCGCCTTGGTTGGCGTAAACGGTAGTGGAAAATCGACGTTGTTCA
AAAGCATCATGGGGTTGGTCAAGCCAACCTCAGGGCAGGTACTGCTCAATCAGCAACCGATCTATCAGGCGCTGAAACAG
AATCTGGTTGCCTATGTTCCACAAACAGAAGACGTGGACTGGAATTTCCCCGTTTTGGTCTCCGATGTGGTCATGATGGG
ACGTTATGGAAGAATGAATTTCCTGCGCATCCCCAGTAAACAAGACCGCGCAATTGTGGCGGAATCGCTGGAGCGTGTTG
GGCTTTCATCGCTACAACATCGTCAGATCGGTGAACTGTCTGGTGGGCAGAAAAAGCGCGTTTTTCTGGCGCGGGCACTG
GCTCAGCAAGGCAGTGTTTTGCTGCTGGATGAGCCTTTTACCGGTGTAGACGTCAAAACAGAGAATGCGATTATCGATCT
GCTTCGCACCTTGCGCGACGAAGGGCATTTAATTCTGGTGGCGACCCATAACCTCGGTAGCGTTCCCGAGTTTTGCGACA
ACGTTATTTTGGTCAATCGCACCGTTTTAGCCGCAGGACCGACGCACAGTACCTTTACCCAAAGCAATTTGGAGAAAACG
TTCGGCGGCGTTCTACGGCACATTAACCTCGGGGGATCTCATCTTCATGACGACGACGATGCCCGCTCGGTGACAGTGTT
GACAGATGATGAGCGTCCGGCGGTGTTCTATGGTTCGACTAAGAGCGATCCTCCTGCATCACGCGTGATACCGGAGGAGA
AAAAGCCCTGA

Protein sequence : 
MSSDRAVQSLEVNDVSVTYSNGHQAIRHASFSLAGGTICALVGVNGSGKSTLFKSIMGLVKPTSGQVLLNQQPIYQALKQ
NLVAYVPQTEDVDWNFPVLVSDVVMMGRYGRMNFLRIPSKQDRAIVAESLERVGLSSLQHRQIGELSGGQKKRVFLARAL
AQQGSVLLLDEPFTGVDVKTENAIIDLLRTLRDEGHLILVATHNLGSVPEFCDNVILVNRTVLAAGPTHSTFTQSNLEKT
FGGVLRHINLGGSHLHDDDDARSVTVLTDDERPAVFYGSTKSDPPASRVIPEEKKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-82 63
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-82 63
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-82 63
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-82 63
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-82 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_050488.1 chelated iron transport system membrane protein BAC0440 Protein 7e-112 81
yfeB YP_050488.1 chelated iron transport system membrane protein BAC0350 Protein 2e-82 63
yfeB YP_050488.1 chelated iron transport system membrane protein BAC0400 Protein 5e-47 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_050488.1 chelated iron transport system membrane protein VFG0526 Protein 2e-82 63