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Name : hrpS (ECA2090) Accession : YP_050185.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : sigma-54-dependent enhancer-binding protein Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 2379836 - 2380900 bp Length : 1065 bp Strand : + Note : Similar to Erwinia chrysanthemi HrpS SWALL:Q8KUM2 (EMBL:AF448202) (327 aa) fasta scores: E(): 6.8e-80, 74.67% id in 304 aa, and to Erwinia amylovora sigma-54-dependent enhancer-binding protein HrpS SWALL:Q9X3T0 (EMBL:AF083877) (324 aa) fasta scores: E(): DNA sequence : ATGAACAATCATTACCGTCAGGACAGACAGCACTATTCATCATTAAGACATTCATCATCAGAGAATTCAGCATTAGAAAA TCCCCCATTAGCAAACCGATCACTCGAATATTCCTCGTTACCGTCGAGCTATTCCACCTACACGGCTGAGGATATTCACT CATCGTTGTCGCCAATCATCAATGTTATTGCTCCTCTCAATGTCGACATCGTTCTCGAAGGTGAAACGGGTACGGGGAAA GACACGCTGGCAAACCGGATCCATCAAATTTCTCAATGCAGCGGCCCTTTGGTGGCGGTGAACTGTGCCGCTGTGCCGGA AAATCTGGCTGAAAGCGAGCTGTTTGGCGTGGTATCGGGTGCGTATACCGGCGCTAACCGCTCCCGCGCCGGTTATCTTG AAAGTGCAGACAAGGGAATACTGTTTTTGGATGAGATCGACAGCATGCCCATGACGCTGCAAGCCAAGATGTTACGCGTG CTGGAAAGCCGCGGCGTTAAGCGGCTGGGGAGTACTCAGTTCACCCCCGTAGATATGCGTGTGATTGTGGCGACGCAAAC ACCGCTGCTGCAACTGGTAGAGAAAGGATTGTTTCGACGCGATCTTTATTTCCGTCTGGATACGGTAAAAATTCAGTTGC CGACTCTGCGTTCCCGCAGTGATCTCATTCTGCCGCTGTTTCAGCGTTTTAGTCAGGAAGCGGCGGTACGCCTGCGGATG ACATTGCCGCCGATGACGGCGGAAATTGACGAGCAACTGCTGACCCACAGCTGGCCGGGCAATATCCGTGAGCTGAAAGC GGCGGCCGATCGCTGGGCAATGGGGCTGTCGCCCTTGGCTGAAATTCAACAACTACTGCATCCACGCCCTTTGCAGCTCA AAGACCGTTTAAAGCGGATTGAAAAGTTTCTGATTCAGGATGCGCTGCGCCGCCACGGCCACTGTATTGACGATGTGATT GTGGAGTTGGGGATCCCCAAACGAACGCTCTACCATCGCCTGAAAGTGCTTAACGTGACGGTGCGAGAAATGTGCGCAGG GGGCGGGGAAACGTGTCAGGCATGA Protein sequence : MNNHYRQDRQHYSSLRHSSSENSALENPPLANRSLEYSSLPSSYSTYTAEDIHSSLSPIINVIAPLNVDIVLEGETGTGK DTLANRIHQISQCSGPLVAVNCAAVPENLAESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKMLRV LESRGVKRLGSTQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSDLILPLFQRFSQEAAVRLRM TLPPMTAEIDEQLLTHSWPGNIRELKAAADRWAMGLSPLAEIQQLLHPRPLQLKDRLKRIEKFLIQDALRRHGHCIDDVI VELGIPKRTLYHRLKVLNVTVREMCAGGGETCQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 4e-88 | 66 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 2e-85 | 62 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 9e-85 | 61 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 9e-85 | 61 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 3e-84 | 60 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 1e-75 | 57 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 1e-75 | 57 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 1e-77 | 57 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 1e-76 | 56 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 9e-74 | 56 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 2e-72 | 54 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 2e-72 | 54 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 2e-73 | 54 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-73 | 54 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 3e-71 | 54 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 3e-71 | 54 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 7e-72 | 54 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 7e-72 | 54 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 3e-71 | 53 |
