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Name : hrpL (ECA2087) Accession : YP_050182.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 2376550 - 2377092 bp Length : 543 bp Strand : + Note : Similar to Erwinia chrysanthemi HrpL WALL:Q8KUM5 (EMBL:AF448202) (184 aa) fasta scores: E(): 9.4e-40, 71.42% id in 168 aa, and to Erwinia pyrifoliae sigma factor hrpL SWALL:CAD27523 (EMBL:AJ438881) (182 aa) fasta scores: E(): 1.9e-31, 56.97% id in 165 aa DNA sequence : ATGGAAATGTCTACCAAACACACCGAACAGACCCCTTCGCTTTACCCGGCGCTAGCTGTCGATTGGGAACAGGTGTTTCG TCAACACGGAAAGAAATTGCATAACTTTATCCGCAAGCGCGTCAGCAACCATGATGACGTTGAGGATTTACAGCAAATGA CCTATCTGGAAGTGCTCAAACATCAGGATAAATTTGCGGGGGCATCGCGGCCGGAAACATGGGTGTTCGGCATTGCTCTC AATCTGGTGCGCAACTATTTCAAGCAGGCACGACAGCGCGCTCAGGAAATGGGCGATGAGATGCTGGAACATATCGCGAT AGAACTCGATCCCGGCGCGATTACCGAAAGCCAGCGAGCCCTGAAACGCGCCATGGATGCTATCGTCTCATTGCCTGAGG ATACTCGTCAGATGCTGATGCAACTGCTGGATACCGATGCCAGCTACCAGGATCTCGCGTTGCAGTTGGGGATCCCCATC GGTACGGTGCGGTCACGACTGTCTCGTGCCCGAGGTGTGATCCGTCAGGCCGTTGAATCCTGA Protein sequence : MEMSTKHTEQTPSLYPALAVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKFAGASRPETWVFGIAL NLVRNYFKQARQRAQEMGDEMLEHIAIELDPGAITESQRALKRAMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLGIPI GTVRSRLSRARGVIRQAVES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpL | AAD24681.1 | sigma factor HrpL | Virulence | Hrp PAI | Protein | 3e-45 | 58 |
| hrpL | ABA47271.1 | HrpL | Virulence | S-PAI | Protein | 8e-32 | 50 |
| hrpL | NP_791231.1 | RNA polymerase sigma factor HrpL | Virulence | Hrp PAI | Protein | 8e-26 | 46 |
| hrpL | AAT96137.1 | HrpL | Virulence | T-PAI | Protein | 5e-26 | 45 |
| hrpL | AAT96191.1 | HrpL | Virulence | T-PAI | Protein | 5e-26 | 45 |
| hrpL | AAT96335.1 | HrpL | Virulence | S-PAI | Protein | 2e-32 | 45 |
| hrpL | AAG33875.2 | HrpL | Virulence | Hrp PAI | Protein | 4e-25 | 45 |
| hrpL | AAT96295.1 | HrpL | Virulence | S-PAI | Protein | 3e-32 | 45 |
| hrpL | AAT96254.1 | HrpL | Virulence | S-PAI | Protein | 2e-32 | 45 |
| hrpL | ABQ88350.1 | HrpL | Virulence | Hrp PAI | Protein | 9e-26 | 44 |
| hrpL | AAA17652.1 | putative alternate sigma factor | Virulence | Hrp PAI | Protein | 9e-26 | 44 |
