|
Name : hrpI (ECA2085) Accession : YP_050180.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2372933 - 2375035 bp Length : 2103 bp Strand : - Note : Similar to Erwinia amylovora harpin secretion protein HrpI SWALL:HRPI_ERWAM (SWALL:P35654) (697 aa) fasta scores: E(): 2e-193, 76.35% id in 702 aa, and to Pantoea agglomerans HrcV protein HrcV SWALL:Q937I5 (EMBL:X99768) (719 aa) fasta scores: E(): 2.2e-19 DNA sequence : ATGAATCTGCTGATTATCTGGCTAAATCGTATTGCGCTGAGTGCAATGCAGCGCTCGGAGGTGGTGGGCGCGGTGATCGT CATGTCTATCGTTTTCATGATGATCATCCCGCTGCCCACCGGACTGATCGATGTGCTGATCGCGCTTAATATCTGTGCCT CCTCTCTGCTAATCGTGCTGGCGATGTACCTGCCTAAACCACTGGCTTTCTCGACGTTTCCGGCGGTGCTGCTGCTAACC ACCATGTTCCGGCTGGCGATCTCCATTTCCACCACGCGCCAAATTCTGCTCCAGCAGGACGGCGGCCATATCGTTGAGGC TTTCGGTAACTACGTGGTGGGCGGGAATCTGGCGGTCGGTCTGGTTATTTTCCTGATTCTGACGGTAGTGAATTTTATGG TCATCACCAAAGGCTCTGAACGTGTGGCCGAGGTGGCGGCACGCTTCACGCTCGATGCGATGCCAGGTAAACAGATGTCC ATCGACAGCGATCTCCGCGCTGGGTTAATCGAAGCCCATCAGGCACGGCAGCGGCGGGAAAATCTGGCGAAAGAAAGCCA GCTTTTCGGGGCAATGGATGGCGCGATGAAGTTCGTTAAAGGCGATGCGATTGCGTCGCTGGTTATCGTGTTCATTAACA TGATCGGCGGCTTTGCCATCGGCGTGTTGCAACACAATATGGCCGCGTCCGATGCCATGCACGTCTACTCGGTATTGACC ATCGGCGATGGGCTGATCGCCCAGATTCCGGCACTGCTGATTTCACTGACCGCCGGGATGATCATTACTCGCGTTTCGGC CGACGGGCAAAAAGTGGATGCCAATATTGGTCGGGAAATAGCGGAGCAGCTCACCAGCCAGCCCAAGGCGTGGATCATCT CCTCCATCGGCATGTTTGGATTTGCACTGCTGCCGGGGATGCCAACGTTGGTGTTTGTCGCCATCAGTTTGTCCTCGCTC GGCAGCGGTCTGTTTCAGCTCTGGCGCATCAAACAACAAGGCCAGTTGGATGCCAACCAATTGGAAGCGGACAACATGCC TGCCGAACAGAACGGTTATCAAGATCTACGGCGCTTCAACCCCACGCGTGCCTACCTGCTGCTGTTTCATCCGGTCTGGC AAGGGCAGCCGACGGCGACGGTGTTGGTGCAGAATATCCGTCGCCTGCGTAATCGGCTGGTCTACCGCTTTGGCTTTACG CTGCCGTCCTTTGATATCGAATTCAGCGACCGTCTGGCGGAAGATGAATTCCAGTTTTGTGTCTATGAAATTCCCTACGT TAAAGCCACATTTGTCACCGACCAGTTGGCGGTTGCCAATGGAGCCATCGAACAGGTTGACGCGACGATCGCCACGCCAG GCCACACGTTACGGGATGAAAGCCAGTGGCTATGGCTGCCGCTGGCGCATGTCGCCCAGCAGCCGGACGACATACCGCGC TGGACATCAGATGAGCTGATTCTGGCTCGCATGGAACAGGCCATTCACCGCACAGGTTCACAGTTCATCGGCTTACAGGA AACCAAATCTATTCTGGCCTGGCTGGAGAGTGAACAGCCGGAGTTGGCGCAGGAGCTACAGCGCATCATGCCGCTTTCGC GTTTTGCCAGCGTACTGCAACGGCTGGCTTCCGAACGTGTACCGCTGCGGTCGGTGCGCCCTATCGCCGAAGCGCTGATT GAAGTCGGCCAACACGAACGGGACACGCTGGCGTTGACCGACTACGTGCGTCTGGCGCTCAAATCACAAATCTGCCACCA GTACAGCGATGAGAACAACCTCGCGGTCTGGCTGCTGACGCCGGAAAGCGAAGAGCTGCTGCGCGATGCGCTACGCCAGA CGCAGAACGAAACCTTCTTCGCCCTGACGCAAGACTACGCCTCAACGCTGCTCAGCCAATTGCGGCAGGCGTTTCCACCG TTCTCGTCACAGAGCAGTCTGGTGCTGGTAGCACAGGATTTACGCAGCCCGCTGCGCACGCTGTTACAGGACGAATTTCA CCACGTCCCCGTGCTGTCCTTCACCGAACTGGAATCCACCCTGTCGATCAACGTCATTGGACGCCTTGATCTTTACGACT CCCCTGATCCCTTTAGCGCATAG Protein sequence : MNLLIIWLNRIALSAMQRSEVVGAVIVMSIVFMMIIPLPTGLIDVLIALNICASSLLIVLAMYLPKPLAFSTFPAVLLLT TMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVGLVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMS IDSDLRAGLIEAHQARQRRENLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFGFALLPGMPTLVFVAISLSSL GSGLFQLWRIKQQGQLDANQLEADNMPAEQNGYQDLRRFNPTRAYLLLFHPVWQGQPTATVLVQNIRRLRNRLVYRFGFT LPSFDIEFSDRLAEDEFQFCVYEIPYVKATFVTDQLAVANGAIEQVDATIATPGHTLRDESQWLWLPLAHVAQQPDDIPR WTSDELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQRLASERVPLRSVRPIAEALI EVGQHERDTLALTDYVRLALKSQICHQYSDENNLAVWLLTPESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPP FSSQSSLVLVAQDLRSPLRTLLQDEFHHVPVLSFTELESTLSINVIGRLDLYDSPDPFSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 78 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 68 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 68 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 65 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 63 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 1e-99 | 41 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-102 | 41 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 7e-120 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrpI | YP_050180.1 | type III secretion system protein | VFG0064 | Protein | 5e-128 | 44 |
| hrpI | YP_050180.1 | type III secretion system protein | VFG0384 | Protein | 4e-119 | 41 |
| hrpI | YP_050180.1 | type III secretion system protein | VFG0198 | Protein | 2e-108 | 41 |
