Gene Information

Name : hrcR (ECA2079)
Accession : YP_050174.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2367812 - 2368465 bp
Length : 654 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGACGTCCGGCGCATTCGATCCGTTGATGTTTGCGCTCTTTCTGGGCGCGCTCTCTTTGATTCCGCTGATGATGATTGT
CTGCACCTGCTTTCTGAAGATTGCGATTGTGCTGCTGATTACCCGCAACGCCATCGGGGTGCAGCAGGTACCGCCTAATA
TGGCGCTGTACGGTATCGCCCTTGCGGCAACGATGTTTGTCATGGCTCCGGTGTTTCAGGACATCAGCAAGCGCGTGCAG
GAAAAACCGCTGGATATGACCGATATCACCTCGCTTCAGGCCAGCGTGACCTACGGGTTGGAACCGCTGCAAACCTTTAT
GTCGCGCAACGTTGACCCGGATATCCTCACCCATTTGCATGAGAACAGCCTGCAAATGTGGCCTGCCTCGCTATCCGAGA
AGGTGAATACGCAAAACCTGCTGCTGGTGATTCCGGCTTTCGTGCTGTCGGAGCTACAGGCTGGGTTCAAAATCGGCTTT
CTGATCTATATCCCGTTCATCGTCATCGACCTCATCGTCTCCAATGTGCTGTTAGCGCTGGGGATGCAGATGGTCGCACC
GATGACGCTCTCGCTGCCGTTAAAGCTGCTGCTGTTCGTGCTGGTCAACGGCTGGACACGGCTGCTAGACGGCCTGTTCT
ACAGCTACCTGTGA

Protein sequence : 
MTSGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVFQDISKRVQ
EKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGF
LIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-74 77
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-67 74
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-67 74
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-66 72
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 9e-66 72
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-61 71
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-68 71
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-61 71
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-63 71
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-61 71
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-68 70
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-36 49
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-35 47
escR AAL57527.1 EscR Virulence LEE Protein 6e-33 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-32 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 6e-33 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-33 44
escR CAI43889.1 EscR protein Virulence LEE Protein 6e-33 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-33 44
escR AAC31528.1 L0049 Virulence LEE Protein 6e-33 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-33 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-33 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-33 44
escR AAC38369.1 EscR Virulence LEE Protein 5e-32 44
escR AAK26700.1 EscR Virulence LEE Protein 6e-33 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-27 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-31 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-31 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-31 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-31 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-31 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-27 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-27 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-27 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-27 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-27 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-30 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-30 42
unnamed AAL06354.1 EscR Virulence LEE Protein 6e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_050174.1 type III secretion system protein VFG0044 Protein 2e-37 48
hrcR YP_050174.1 type III secretion system protein VFG0394 Protein 7e-36 47
hrcR YP_050174.1 type III secretion system protein VFG0188 Protein 2e-36 46
hrcR YP_050174.1 type III secretion system protein VFG0827 Protein 3e-33 44
hrcR YP_050174.1 type III secretion system protein VFG0715 Protein 3e-32 44
hrcR YP_050174.1 type III secretion system protein VFG0519 Protein 2e-31 43
hrcR YP_050174.1 type III secretion system protein VFG2338 Protein 2e-22 43
hrcR YP_050174.1 type III secretion system protein VFG1773 Protein 7e-32 42
hrcR YP_050174.1 type III secretion system protein VFG2494 Protein 1e-22 42