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Name : hrcU (ECA2076) Accession : YP_050171.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 2365644 - 2366723 bp Length : 1080 bp Strand : - Note : Similar to Erwinia amylovora HrcU SWALL:Q46649 (EMBL:L25828) (360 aa) fasta scores: E(): 1e-95, 66.94% id in 360 aa, and to Pantoea agglomerans HrcU protein HrcU SWALL:Q47859 (EMBL:X99768) (360 aa) fasta scores: E(): 5.4e-92, 64.34% id in 359 aa DNA sequence : ATGAGTGAGAAAACGGAACAACCCACAGAGAAGAAACTGGAAGACGCACGCCGCAAAGGGGAAGTGGGGCAAAGTCAGGA TGTGCCCAAGCTGCTGATCTGCGTCGGCCTGCTGGAGTGTGTACTGGCGCTGGCGGACAGCACGATGGGGAAACTGCAAA CGCTGGTACAGCTGCCGCTGCAACGGCTTGGCACACCGTTTGCGCAGGTGGCGAAAGAAGTGTTTCATGACGCCGCTGTG CTGGCGGGTACGCTCTGCCTGCTGTCTGCAGCAATTGCCGTGCTGTTACGCATCGCGGGTGGTTGGCTCCAGTATGGTCC GCTGTTCGCGCCCGAAGCGCTGAAGCTCGATCTCAATCGGCTGAACCCAATCAACCAGTTCAAACAGATGTTTTCGATGC GCAAGCTGGTGGAAATGTTGACCAACATTCTAAAGGCGGTGGTGATCGGTACGGTCTTTTATAAAGTGGTGGTACCGGAA TTAGAGGCGTTGGTTGAATTAGCCTATGGCGATCTGCACGGCTTCTGGCAAGGGGTGAAAGCGCTGCTGACGCGCATTAC CCGCACCACGCTAACGGCGCTGCTGGTGCTGTCGGCACTGGATTTCGGCATGCAAAAATATTTCTTTCTCAAGCAGCAGC GCATGAGCCACGAAGATTTACGCAACGAGCACAAAGATTCCGAAGGCGATCCGCATATGAAAGGCCACCGCAAATCGCTG GCGCATGAACTGGCGAACGAATCCGCCGCGCCGCGTCCCAAGCCGAAGCTGGAAGATGCCGATATGCTGCTAGTCAACCC GACGCACTATGCGGTGGGGCTCTACTATCGCCCCGGCAAAACTCCGCTGCCGCGCATTTTGTTTAAAGGTGAAAACAAGG CGGCGCAGGAGCTCATCGCACAAGCGAAAAAAGCGGGCATCCCGGTGATTCGCTTCATTTGGCTGACCCGCACGCTGTAT CGCACCACGCCGGAAGGCCATTATATTCCGCGCGAAACGCTTCAGGCGGTAGCGCAGGTGTATCGCGTCCTGCGCCAGCT CGAAGACGAGCAAAAACGCGACATTATCGAGATGGAGTGA Protein sequence : MSEKTEQPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQRLGTPFAQVAKEVFHDAAV LAGTLCLLSAAIAVLLRIAGGWLQYGPLFAPEALKLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPE LEALVELAYGDLHGFWQGVKALLTRITRTTLTALLVLSALDFGMQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKSL AHELANESAAPRPKPKLEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENKAAQELIAQAKKAGIPVIRFIWLTRTLY RTTPEGHYIPRETLQAVAQVYRVLRQLEDEQKRDIIEME |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 4e-107 | 67 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 1e-87 | 56 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 9e-88 | 56 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 2e-85 | 56 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 2e-87 | 56 |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-75 | 53 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 2e-75 | 53 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 2e-75 | 51 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 2e-75 | 51 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 4e-62 | 51 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 2e-71 | 51 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 4e-60 | 51 |
