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Name : gabD (ECA2054) Accession : YP_050149.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 2338271 - 2339743 bp Length : 1473 bp Strand : + Note : Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 6e-122, 65.76% id in 482 aa DNA sequence : ATGCAACTGAAACAGTCTATTTCACTGAAACAACAGGTGCTATTTCGTCAACACTGCCTGATTGATGGCGAGTGGCAGGA TAGCCAAAGCGGTGAACGCCTGAATGTCACCAATCCGGCGACGGGTGAGGTGCTGGGTACGGTGCCACTCGTGACGGTGT CACAAACCGAGCAGGCGATTGCCGCCGCAGAACAGGCGCTGGTTGAATGGCGTAAGAAGACGGGAAAAGAACGTGCCGCG CTATTGCAGGCGTGGGCACGCCTGATTATGGACAATCAGGACGATCTGGCTGTGCTGCTGACGGCGGAGCAGGGAAAACC GCTGGCGGAAGCGCGGGGCGAAATTGCCTATGCCACCAGTTTTATCGACTGGTTTGCGGAAGAAGCTAAACGCATTGAAG GCAGCGTGCTGCAATCGCCGCAGGGGCAGCAGCGCCTGATGGTGATTAAGCAGCCCATCGGCGTGTGTGCAGCGATTACG CCGTGGAATTTTCCGGCTGCGATGATCACCCGTAAGGTCGGGCCCGCGTTGGCGGCGGGCTGCACGATGATCGTTAAACC TGCGGAGCAGACGCCGTTTACCGCGCTGGCGCTGGCGGAATTGGCGCAGCAGGCGGGTATTCCGCGCGGCGTATTGCAGG TGATTGTCGGCGACGCACAGTCCGTCGGTAAGGTGCTGTGCGATAGCCCAGTGGTGCGCAAGCTGAGCTTCACCGGTTCC ACGGAAGTGGGCCGCATCCTGATGGCGCAGAGTGCGCCAACGGTGAAAAAATTGTCGCTGGAGCTAGGGGGCAACGCGCC GTTTATCGTGTTTGACGATGCCGATGTGGATCAGGCGGTGAAAGGCATTCTGGCCTCCAAATTCCGTAACAGCGGACAGA CCTGCGTTTGTGCTAACCGGATCTATGTGCAGAACGGGATTTACCCGACGCTGGTAGAACGGCTGATCGAGGAAGTGCGT AAATTAAACGTGGGCGACGGTACACAGCCAGGTGTCACACAGGGGCCGCTGATTGATGACGATGCGGTCAGCAAAGTCGA GCAGCACATTGCCGATGCGTTATCGCACGGGGCAACGCTACTACTGGGCGGCCAACGCCACGAACGAGGCGGTACGTTCT TCACGCCGACCATCGTTGGCGACGTGACCCGCGAGATGCGTTTTGCGCGTGAAGAGACGTTCGGGCCAGTCGCACCGCTG TTCCGCTTCAGCGATGAAGCCGAGGTGATTGCGATGGCGAACGATACCGAGTTCGGTCTGGCTGCCTATGTCTACACGCG CGACGCGATACGCCAGTGGACGGTGCCGGAAGCACTGGACTACGGCATGGTTGGCATCAATACCGGATTGATCTCGAATG AAGTCGCGCCGTTTGGCGGGGTGAAACAGTCAGGGCTGGGCCGTGAAGGCTCACGTTTCGGTATCGAAGACTATCTGGAA ATGAAATACCTTTGCGTCGATCTTTCCCGATAA Protein sequence : MQLKQSISLKQQVLFRQHCLIDGEWQDSQSGERLNVTNPATGEVLGTVPLVTVSQTEQAIAAAEQALVEWRKKTGKERAA LLQAWARLIMDNQDDLAVLLTAEQGKPLAEARGEIAYATSFIDWFAEEAKRIEGSVLQSPQGQQRLMVIKQPIGVCAAIT PWNFPAAMITRKVGPALAAGCTMIVKPAEQTPFTALALAELAQQAGIPRGVLQVIVGDAQSVGKVLCDSPVVRKLSFTGS TEVGRILMAQSAPTVKKLSLELGGNAPFIVFDDADVDQAVKGILASKFRNSGQTCVCANRIYVQNGIYPTLVERLIEEVR KLNVGDGTQPGVTQGPLIDDDAVSKVEQHIADALSHGATLLLGGQRHERGGTFFTPTIVGDVTREMRFAREETFGPVAPL FRFSDEAEVIAMANDTEFGLAAYVYTRDAIRQWTVPEALDYGMVGINTGLISNEVAPFGGVKQSGLGREGSRFGIEDYLE MKYLCVDLSR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 5e-141 | 65 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 3e-80 | 42 |
