Gene Information

Name : fliP (ECA1716)
Accession : YP_049816.1
Strain : Pectobacterium atrosepticum SCRI1043
Genome accession: NC_004547
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1962607 - 1963383 bp
Length : 777 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAGTGCCTTGCCTAATTATTTTCGTATCACCACCTTGCTTCACACCCTTCGCTATGGTTTAGCCATCGGTTTATTGTT
CATGGCACCATCAGTATGGGCGCAGCTTCCTGGAATTGTGACGCAACCGCTACCTAACGGTGGGCAGAGCTGGACACTAT
CAGTACAAACGCTGGTTTTCCTAACGTCACTAACCTTTCTCCCTGCCGCCTTGCTAATGATGACCAGCTTCACCCGTATC
ATCATTGTACTGAGTTTGTTACGCAATGCGCTGGGTACACCAACCGCGCCACCGAATCAGGTGTTACTCGGATTGACGCT
TTTTCTGACGTTTTTTGTCATGTCGCCGGTATTAAACCGTGTTTATGACGAAGCCTATCTTCCATTCAGTCAGGACCAAA
TCAGCATGGAAGTCGCCATCGAACGTGGCGCGGAGCCTCTTCGTGAGTTCATGTTGCGGCAAACCCGGGAAACCGACTTG
GCATTGTTTACCAGGCTAGCAGAAATCCCGGAAATTCAGGGACCTGAAGCGGTACCCATGCGTGTACTTCTTCCCGCATT
TGTGACAAGTGAACTAAAAACCGCTTTCCAGATTGGTTTTACCGTATTTATTCCTTTCCTCATTATCGATCTCGTTGTTG
CCAGCGTATTGATGGCACTGGGGATGATGATGGTTCCTCCGGCGACAATTTCATTGCCTTTTAAACTCATGCTTTTCGTA
TTAGTCGATGGCTGGCAGCTGCTACTCGGTTCATTAGCCCAAAGTTTTTACAGTTAG

Protein sequence : 
MSALPNYFRITTLLHTLRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFLPAALLMMTSFTRI
IIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPLREFMLRQTRETDL
ALFTRLAEIPEIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFV
LVDGWQLLLGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-23 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-23 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-23 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-25 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-19 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-19 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-18 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-18 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-26 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 9e-29 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-26 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-29 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-29 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-28 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-19 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-20 41
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 7e-28 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-27 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-26 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_049816.1 flagellar biosynthesis protein FliP VFG2338 Protein 3e-86 84
fliP YP_049816.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-70 70
fliP YP_049816.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-53 58
fliP YP_049816.1 flagellar biosynthesis protein FliP VFG1259 Protein 7e-56 57
fliP YP_049816.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-27 44
fliP YP_049816.1 flagellar biosynthesis protein FliP VFG0044 Protein 5e-28 43