|
Name : virB4 (ECA1620) Accession : YP_049721.1 Strain : Pectobacterium atrosepticum SCRI1043 Genome accession: NC_004547 Putative virulence/resistance : Resistance Product : conjugal transfer protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 1874142 - 1876889 bp Length : 2748 bp Strand : - Note : Similar to Escherichia coli VirB4 protein VirB4 SWALL:Q91UX4 (EMBL:AJ297913) (826 aa) fasta scores: E(): 2.4e-90, 34.71% id in 818 aa DNA sequence : ATGGCTACGCTGAACAAAGCACTGACGCGGCCTGCCGCCATAGCCGGTATTCCCATTGTGCCGTTCGTGATAGTCAGCGG GGCCATCGTCCTGCTGTCTGTCTATCTCAGCTATTACCTGGTGTTACTGCTCATTCCGGCCTGGCTGGAGATGAAGGCAA AGGCCAGAACGGATATCCATTATTTCGGGCTGCTCTGGCTGGCCTTTAAGACCCGAGGCCGGTTTGCCACCAACAAATAT TTCGGCGCCAATGCCATGCTGGCAAACCGCTATGACGCCGTCGATGTGTCGGAGTTTATTGAGAAGATGAAATTAAACGA GCGCGTTACGCTGGATAAACACATTCCGTACTCCTCCCATGTTCACCCCCAGGTAATAAGAAACCGCCACGGCGACTTGG TTTCTACCTGGGAGTTGGGCGGTACGGTATTTGAATGCGAGGATGAACATCACCTGACGTTAATGGCAACCCATCTTAAT AACGTGATCCGTTCGTATGAGGGCTTGCCGATAACCTTTTATCTTCACCGCATTAGGGAAAAATACCAGGATGCCTTCGC TGCAAGTTCAGGCATTCCCTTTTCGGACGACGTCACCGCGCTTTATTATCAACCGATAAAGGAAAAACCGCTCTGGCGGC ACCGGCTGTTTTTCACCCTGTGCTATGCGCCGTTCTCCCGACTTGAGAAAAAGGCCATGAAGGCGCAGCCGTCCGGTAAA CGTACAGCGGCGCTGGATGGTGCCCTAAAAGTAATGCTGGAACACCGGGCGGCGCTGGCTTCTGCCCTGTCCCGCTATAC GGCGACGCCGCTGGGGGTGTATGAAGAAAACGGGCGGGTTTACTCGTCCCAGCTTTCCTTTTATCACCGCCTGCTCACCG GGCAGTGGCAAAAGGTGGCGGTCACGCGCTCGCCGTTTTACGACATACTCAGCACGCCGGATGTGTTTTTCACCACCGAT ACCGCCGAGTGCCAGACGGTCAGCGGCTCCCGCTTCTTTCGTAGTCTGGAAATCAAGGACTACTCACCTGACACCGCGAC CGGCCTGCTGGATGCACTGCTGTACGCGGAAAGCGAGTACGTGATGACACAGTCGTTCACCTGCATGGCGCGGGATGAAG CACAAAACCATATCCGGCTCGCGGAAAAGCGGCTGAATTCGGCGGCCGACGACGCGATCTCACAACGTGAAGAACTGATT GTATTGCGCGACCTGCTCCAGTCCGGGCATGTTTCCTGCGGAAAATACCACTTTTCCCTGCTGGTATCCTCAGACAGCGC CGACCAGGTGGTGAAGGACGTCAACGCGCTGGCGCAGCCCTTCGCCGACCTCGGCATTATGACCACCCTGTCCACACTGT CGCTGCCCGCTGCGTACCTGGCGCAGTTGCCGGGTGTGTATACGCTGCGCCCCCGGCTGGTGGCCGTCAGCAGCCAGAAC TTTGCCGATATGGCGAGCCTGCATAACTTTCACCCCCACAAGCGCAACGGCAATCCGTGGGGCGAGGCCATTACCATCAT GACCTCCCCCGGCGGCGGCGGGTATTACCTGAATTTGCACGACAGCCAGGCAGGACGGGACGACTTCAACGAAAAAACAC CCGGGAACACGGCGATTATCGGGAAAACCGGCTCCGGGAAAACGATGCTGATGACCGTGATGCAGCAACTAATGCAGAAG TACCGCAATCCGGCGACGTTTTCCGAATCGGCCCCTCACAAGCGGTTAAGCACCGTCTATTTCGACAAGGACCGGGCGGC GGAGATGGCGATACGCCAAATGGGCGGTCGCTACTTCCGACTCCGTACTGGCGTCCCTACCGGGTTTAATCCATTTGCGC TTGCGCCGACCAAACGGAACATCAGCTTTATCAAGCGGCTGGTGCGGATGCTGTGTCGTCGCAATAGCAAACCACTCGAT CCTCGCGATGAGGAGCGTATCAGTACCGCCGTGGACACCATTATGCTGGACTACCCGCCGGAGTATCGCCGTTACGGCAT CACGCGCCTGCTGGAAGTCCTGCCGGAGCCGCCGACGAAGGAGGCCCGTACAAACGGGCTGCGCATTCGACTGAAACAGT GGGCGCAGGGCGGTGAGTTCGGCTGGGTATTCGACAACGAAACGGACACCTTCGATATCAGCGACATCGATAATGTGGGC ATCGACGGCACGGAGTTTCTGGATGATGACGATATTCGCGGTCCCATCACCTTCTATCTGCTGTACCGCGTTACCGGCCT GCTGGACGGTCGCCGGCTGGTGATGTTCATGGACGAGTTCTGGAAGTGGCTGGCCGACGTGGAATTCTCCCGCTTTTCGC TCAATATGCTGAAAGTCATTCGCAAGCTGAACGGCATCTTTATCCCCGCCACCCAGTCGCCTGATGAAATCGTCAGGCAT CCCATTGCTCCGGCGATTATTGAACAGTGCGGCACACAGATTTTTCTCGCCAACCCGAAGGCCAGCCGTGCCGATTACGT GGAAAAGATGAAGGTGCCGGACAGTGTATATGACATCGTCAGACACCTTGACCCGGGCGAGCGTTATATGGTGGTCCTGA AAACGCCCCTGCGGGCCGGTGAAACCCGGCCTTTTGTGTCGATGGCGAAAATGGATCTGTCCGGCCTCGGGAAAATCACC CGGATGCTGAGCGGGAGTGAAGACAACCTGAAACTGTTTGACGCCCTTTATCAGGAAGGGATGCAACCCGATGACTGGAA AGACGCCTTTCTTGAGATAGCCCTGTAA Protein sequence : MATLNKALTRPAAIAGIPIVPFVIVSGAIVLLSVYLSYYLVLLLIPAWLEMKAKARTDIHYFGLLWLAFKTRGRFATNKY FGANAMLANRYDAVDVSEFIEKMKLNERVTLDKHIPYSSHVHPQVIRNRHGDLVSTWELGGTVFECEDEHHLTLMATHLN NVIRSYEGLPITFYLHRIREKYQDAFAASSGIPFSDDVTALYYQPIKEKPLWRHRLFFTLCYAPFSRLEKKAMKAQPSGK RTAALDGALKVMLEHRAALASALSRYTATPLGVYEENGRVYSSQLSFYHRLLTGQWQKVAVTRSPFYDILSTPDVFFTTD TAECQTVSGSRFFRSLEIKDYSPDTATGLLDALLYAESEYVMTQSFTCMARDEAQNHIRLAEKRLNSAADDAISQREELI VLRDLLQSGHVSCGKYHFSLLVSSDSADQVVKDVNALAQPFADLGIMTTLSTLSLPAAYLAQLPGVYTLRPRLVAVSSQN FADMASLHNFHPHKRNGNPWGEAITIMTSPGGGGYYLNLHDSQAGRDDFNEKTPGNTAIIGKTGSGKTMLMTVMQQLMQK YRNPATFSESAPHKRLSTVYFDKDRAAEMAIRQMGGRYFRLRTGVPTGFNPFALAPTKRNISFIKRLVRMLCRRNSKPLD PRDEERISTAVDTIMLDYPPEYRRYGITRLLEVLPEPPTKEARTNGLRIRLKQWAQGGEFGWVFDNETDTFDISDIDNVG IDGTEFLDDDDIRGPITFYLLYRVTGLLDGRRLVMFMDEFWKWLADVEFSRFSLNMLKVIRKLNGIFIPATQSPDEIVRH PIAPAIIEQCGTQIFLANPKASRADYVEKMKVPDSVYDIVRHLDPGERYMVVLKTPLRAGETRPFVSMAKMDLSGLGKIT RMLSGSEDNLKLFDALYQEGMQPDDWKDAFLEIAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAP70302.1 | Pilx3-4/VirB3-4-like protein | Not tested | HPI | Protein | 0.0 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| virB4 | YP_049721.1 | conjugal transfer protein | BAC0398 | Protein | 0.0 | 55 |
