|
Name : kdpB (bll6778) Accession : NP_773418.1 Strain : Bradyrhizobium japonicum USDA 110 Genome accession: NC_004463 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 7476369 - 7478489 bp Length : 2121 bp Strand : - Note : One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions DNA sequence : GTGACCTCCATGGATACGATGAAACTGCAAAAACGTGCTGCCGTATCGGCGATGCTCGATCCCAGGATCGTAGTGCCCGC GATCCGCGCCTCCTTCACCAAGCTCGACCCGCGACTGATGGTGAAGAATCCCGTGATGTTCGTGGTCGAGATCGTGGCCG CGCTCACCACCGTGATCTTCCTGCGCGATCTCGTCACCAGCGGCGCGAATCTCGGCTTCACGTTCCAGATCATCCTCTGG CTCTGGTTCACCGTGCTGTTTGCGAACTTCGCCGAGGCGGTCGCCGAAGGCCGCGGCAAGGCGCAGGCTGAATCGCTGCG CAAGACCCGCACCGAGAGCCAGGCCAAGCTGCTCACCGGCACCGGCCAGGCAAAGCTGGTTCCGGGCACGAGCCTGAAGG TCGGCGACATCGTGCTGGTCGAAGCGGGGGACACCATTCCCTCCGACGGCGAGGTGATCGAGGGCGTCGCCTCCGTCAAC GAGGCCGCCATCACCGGCGAATCCGCGCCCGTCATCCGCGAGTCAGGTGGCGACCGCTCGGCGGTGACGGGCGGCACGCA GGTGCTGTCGGACTGGATCCGCGTCCGCATCACCGCCGCGCAGGGCTCGACCTTCATCGATCGCATGATCAAGCTGGTCG AGGGCGCCGAGCGTCAGAAGACGCCGAACGAGATCGCGCTCAACATCCTGCTCGCCGGCCTCACCATCATCTTCGTGTTC GCCACCGTCACGATTCCGAGCTATGCGGCCTATGCCGGCGGCTCGATCTCGGTAGTCGTGCTGGTCGCGCTGTTCGTGAC GCTGATCCCGACTACGATCGGTGCGCTGCTGTCGGCGATCGGCATTGCCGGCATGGACCGCCTGGTGCGCTTCAACGTGC TGGCGATGTCGGGCCGCGCCGTCGAGGCGGCCGGCGACGTCGACACGCTGCTGCTCGACAAGACCGGAACGATCACGCTC GGCAATCGTCAGGCGACCGCGTTCCGCCCCGTTCGCGGCGTCACCGAGCAGGAGCTGGCGGACGCGGCTCAGCTCGCCTC GCTCGCCGACGAGACGCCGGAAGGCCGCTCCATCGTCGTGCTGGCGAAGGAGAAGTATGGCATCCGCGGCCGCGACATGG CCGAGCTCGGGGCAACCTTCATCCCGTTCACGGCGCAGACCCGCATGAGCGGCGTCGATGCCGGCGGCTCGTCGGTGCGC AAGGGCGCGGTCGATGCCATGCTCAACTATGTCGGCGGCGGCGCGCCTCTGGCCGTTGCCTCCGGCAACACCGCCCGCGC GATCCAGCCTGCGGAGCTCTCGGAGGTCGGCCGCGAGATCCAGATCATCGCCGACGAGATCTCGAAAGCCGGCGGCACGC CGCTGGCCGTCGCGAAGGACGGCAAGCTGCTCGGCGTCATCCAGCTCAAGGATATCGTCAAGGGCGGCATCCGCGAGCGC TTTGCCGAGCTGCGCCGCATGGGCATCCGCACCATCATGATCACCGGCGACAACCCGATGACGGCCGCCGCGATCGCGGC GGAAGCCGGCGTCGACGATTTCCTGGCGCAGGCAACCCCCGAGGACAAGCTCAAGCTGATCCGCGACGAGCAGGCCAAGG GCAAGCTGGTGGCGATGTGCGGCGACGGCACCAATGACGCGCCGGCGCTCGCCCAGGCCGATGTCGGCGTCGCCATGAAC ACCGGCACGCAGGCGGCCCGCGAGGCCGGCAACATGGTCGATCTCGATTCCAACCCGACCAAGCTGATCGAAGTGGTCGA GATCGGCAAACAGCTGCTGATGACGCGCGGCGCGCTGACGACCTTCTCGATCGCCAACGACGTCGCAAAATACTTTGCGA TCATCCCGGCGATGTTCTTGGCGTTCTACCCGCAGCTCAACGTGCTCAACGTCATGAACCTGTCGAGCCCGCAGAGCGCC ATCCTGTCGGCGATCATCTTCAACGCGCTTGTCATCATCGCGCTGATTCCGCTCGCGCTGAAGGGCGTCGCCTACCGCGC CGTCGGGGCCGGCGCACTGTTGCGACGTAACCTGCTGATCTACGGGCTTGGCGGCATCGTCATTCCCTTCATCGGAATCA AGGCGATCGACCTCGTCGTCGTCGCCTTGCACCTGGCCTGA Protein sequence : MTSMDTMKLQKRAAVSAMLDPRIVVPAIRASFTKLDPRLMVKNPVMFVVEIVAALTTVIFLRDLVTSGANLGFTFQIILW LWFTVLFANFAEAVAEGRGKAQAESLRKTRTESQAKLLTGTGQAKLVPGTSLKVGDIVLVEAGDTIPSDGEVIEGVASVN EAAITGESAPVIRESGGDRSAVTGGTQVLSDWIRVRITAAQGSTFIDRMIKLVEGAERQKTPNEIALNILLAGLTIIFVF ATVTIPSYAAYAGGSISVVVLVALFVTLIPTTIGALLSAIGIAGMDRLVRFNVLAMSGRAVEAAGDVDTLLLDKTGTITL GNRQATAFRPVRGVTEQELADAAQLASLADETPEGRSIVVLAKEKYGIRGRDMAELGATFIPFTAQTRMSGVDAGGSSVR KGAVDAMLNYVGGGAPLAVASGNTARAIQPAELSEVGREIQIIADEISKAGGTPLAVAKDGKLLGVIQLKDIVKGGIRER FAELRRMGIRTIMITGDNPMTAAAIAAEAGVDDFLAQATPEDKLKLIRDEQAKGKLVAMCGDGTNDAPALAQADVGVAMN TGTQAAREAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIANDVAKYFAIIPAMFLAFYPQLNVLNVMNLSSPQSA ILSAIIFNALVIIALIPLALKGVAYRAVGAGALLRRNLLIYGLGGIVIPFIGIKAIDLVVVALHLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 4e-170 | 60 |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 6e-170 | 60 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 2e-148 | 55 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 6e-147 | 54 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 8e-147 | 54 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 8e-147 | 54 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 8e-147 | 54 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 8e-147 | 54 |
