Gene Information

Name : fliP (blr5816)
Accession : NP_772456.1
Strain : Bradyrhizobium japonicum USDA 110
Genome accession: NC_004463
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 6380153 - 6380905 bp
Length : 753 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
GTGAGGCTGCCGGCCCTCCCGCGTAGAGTTCTTTTTCTTTCTGTCCTGATCGGCGCGGCTTCGCTCGCAGGCTTGGCGCA
TGCGCAGGACATCAGCATCAATCTCGGCGGCCAGGGCGGCGGCGTCACCGAGCGCGCGATTCAGCTCATCGCGCTGCTCA
CGGTGCTGTCGATCGCGCCGTCGATCCTGATCATGATGACGTCGTTCACGCGCATCGTGGTCGTGCTGTCGCTCCTGCGC
ACCGCGATGGGCACGGCGACCGCGCCGCCGAACTCGGTGATCATCGCGCTCGCGATGTTCCTCACCTTCTTCGTGATGGG
GCCGGTCCTGCAAAAATCCTACGACGAAGGCATCCGTCCGCTCGTCGCCAACCAGATCGGCGTCGAGGATGCGCTCCAGC
GCGCCTCGGTCCCGTTGCGCGGCTTCATGCAGAAGAACGTGCGCGAGAAGGATCTCAAGCTGTTCCTCGACCTCTCCGGC
GAGCCGCCGCCGGCCACCCCCGACGAACTCGCGCTCCGCATCCTCATCCCCGCCTTCATGATCTCCGAGCTGAAGCGCGC
CTTCGAGATCGGCTTCCTGCTGTTCCTGCCCTTCCTGATCATCGACCTCGTCGTCGCCTCCGTGCTGATGTCGATGGGCA
TGATGATGCTGCCGCCGGCAACGATATCGCTGCCGTTCAAGCTGATCTTCTTCGTCCTGGTCGACGGCTGGTCGCTGGTG
GCGGGAAGCCTGGTGCAGAGCTACGGGGGATGA

Protein sequence :
MRLPALPRRVLFLSVLIGAASLAGLAHAQDISINLGGQGGGVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLR
TAMGTATAPPNSVIIALAMFLTFFVMGPVLQKSYDEGIRPLVANQIGVEDALQRASVPLRGFMQKNVREKDLKLFLDLSG
EPPPATPDELALRILIPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWSLV
AGSLVQSYGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-27 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 7e-26 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-26 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-26 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-26 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-26 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-50 56
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-52 55
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-42 50
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG1259 Protein 7e-47 49
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG0394 Protein 1e-27 44
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-29 44
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG0519 Protein 1e-26 43
fliP NP_772456.1 flagellar biosynthesis protein FliP VFG0044 Protein 9e-26 42