Gene Information

Name : kdsB (bll1422)
Accession : NP_768062.1
Strain : Bradyrhizobium japonicum USDA 110
Genome accession: NC_004463
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 1551310 - 1552050 bp
Length : 741 bp
Strand : -
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
ATGACCGATCCCCGCATCCTGGTGCTGATCCCGGCCCGCATGGCCGCCACCCGCCTGCCCGGCAAGCCGCTCGCCGATAT
CGCGGGCCTGCCGATGATCGTGCATGTGCTGCGCCGTGCGGAAGCCGCCGGCATCGGCCGGGTCGCTGTGGCTACCGACA
CGCCGGAGATCGCGGCCGTCGTAGCAGCCCATGGCGGCGAGGCCGTGATGACCCGCACCACACACCCCTCCGGCTCGGAC
CGCATCCACGAGGCCATGCAGAAGCTCGATCCCGAGGGCAAGGCCGAGATCGTGATCAATCTCCAGGGCGATTTCCCGAC
GATCACGCCGCAGACCATCCGCGAGGTGCTGCCGCCCTTTGCCGACCCCGCGGTCGACATCGTGACCCTGGCCTCGCAGA
TCCACACCGAGGAGGAGGACCTCGCGCCGAGCGTCGTGAAGGCCGTCGGCTCGCCGATCGGGCCGCGGCGGCTGCGGGCA
CTATATTTCACCCGCGCCACGGCCCCTTACGGCAACGGACCGCGTTACCACCACATCGGCCTTTACGCCTACCGCCGCGC
TGCGCTGGAGCGGTTCGTGTCGCTGCCGCCTTCGCCCCTAGAACTTCAGGAAAGCCTGGAACAACTCCGGGCGGTGGAGG
CCGGCATGCGCATCGACATCATGATCGTCGACAGCGTGCCCCGCGGCGTCGACACACCGCCCGATCTCGAAACCGCCCGC
AGCATCCTTTCCAAATCCTGA

Protein sequence :
MTDPRILVLIPARMAATRLPGKPLADIAGLPMIVHVLRRAEAAGIGRVAVATDTPEIAAVVAAHGGEAVMTRTTHPSGSD
RIHEAMQKLDPEGKAEIVINLQGDFPTITPQTIREVLPPFADPAVDIVTLASQIHTEEEDLAPSVVKAVGSPIGPRRLRA
LYFTRATAPYGNGPRYHHIGLYAYRRAALERFVSLPPSPLELQESLEQLRAVEAGMRIDIMIVDSVPRGVDTPPDLETAR
SILSKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 3e-31 45
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 5e-30 44
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 3e-30 44