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Name : clpB (blr1404) Accession : NP_768044.1 Strain : Bradyrhizobium japonicum USDA 110 Genome accession: NC_004463 Putative virulence/resistance : Virulence Product : ATP-dependent protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1520303 - 1522942 bp Length : 2640 bp Strand : + Note : - DNA sequence : ATGAACATCGAGAAGTATACCGAACGCTCCAGGGGCTTCATCCAGTCCGCGCAGTCGCTTGCGGTGCGCGAGGGGCACCA GCAGTTTTCGACCCTGCACGTTCTGAAAGTGCTGCTGGACGACAATGAGGGGCTCGCTGCCGGTCTGATCGACCGTGCCG GCGGCAACTCCCGCGCAATTTTGAAGGCGACCGAGGACGCCCTGAACAAGGTGCCGAAGGTCTCCGGCGGCGGCGCCGGG CAGATCTATCTGGCGCCCGAGCTCGCACGCACCTTCGATGCCGCCGAAAAGGCCGGCGAGAAGGCCGGCGACAGTTTTGT CACCGTCGAGCGGCTGCTGCTCGGCCTCACGCTGGAGAAGACCAGCGAGGCCGGCACGATCCTCAGCAAGGGTGGTGTCA CCCCGCAAAACCTCAACGCGGCGATCGAGGCCCTGCGCAAGGGCCGCACGGCCGACTCGGCGACCGCCGAGAACGCCTAT GACGCGCTGAAGAAATATGCCCGCGACCTGACCCAGGCCGCGCGCGACGGCAAGCTCGACCCGGTCATCGGCCGCGACGA GGAGATCCGCCGCACCATCCAGGTGCTCTCGCGCCGGACCAAGAACAATCCCGTCCTGATCGGTGAGCCCGGCGTCGGCA AGACCGCCATCGCCGAGGGCCTCGCGCTGCGCATCGTCAACGGTGACGTGCCGGAGAGCCTGAAGGACAAGAAGCTGCTC TCGCTCGACTTGGGCGCACTGATCGCCGGCGCGAAATACCGCGGCGAGTTCGAGGAACGGCTGAAGGCCGTGCTCCAGGA GGTGACCGGGAGCGAGGGCACCTTTATCCTGTTCATCGACGAGATGCACACGCTGATCGGGGCCGGCAAGGGCGACGGCG CGATGGACGCATCGAACCTGCTGAAGCCGGCGCTCGCCCGCGGCGAGCTGCACTGCATCGGCGCGACCACGCTCGACGAG TATCAGAAGCATGTCGAGAAGGACGCGGCGCTGGCGCGGCGCTTCCAGCCGATCTTCGTCAGCGAGCCCTCGGTCGAGGA CACCATCTCGATCCTGCGCGGACTGAAGGACAAGTACGAGCAGCACCATGGCGTGCGGATCACCGATTCCGCGCTTGTTG CCTCCGCGACATTGTCCAACCGCTACATCACCGACCGCTTCCTGCCGGACAAGGCGATCGACCTCATGGACGAGGCCGCC GCGCGCCTGAAGATGCAGGTCGATTCGAAGCCGGAGGAGCTCGATTCGATGGATCGGGAAATCATCCGGCTGAAGATCGA ACAGGAAGCATTGAAGAAGGAGAGCGACGCCGGTTCGAAGAGCCGCCTGCAGACGCTTGAAAAGGAACTCGTCGAGCTCG AGGAAAAATCCGCGTCGTTGACGGCGCGCTGGAGCGCGGAGAAGAACAAGCTCTCCGATGCGCAGAAGCTCAAGGCCGAG CTCGACGGCTTGCGTGTCGAGCTCGCCAATGCCCAGCGCCGCGGCGAATTCCAGAAGGCCGGCGAGCTGGCCTATGGCCG GATCCCCGAGCTCGAACGGCAGCTCGCGGACATCGAGGCCAAGGAGAACTCCGGCGAGATGATGGAGGAGGCGGTCACCG CCAATCACATCGCGCAGGTGGTCTCGCGCTGGACCGGCGTGCCCGTCGACAAGATGCTGGAGGGCGAGAAGGACAAGCTT CTGAAGATGGAGGACTCCCTCGGCAAGCGCGTCGTCGGCCAGGCCGAAGCCGTCCATGCGGTCGCAACCGCCGTGCGCCG CTCCCGCGCCGGCCTCCAGGACCCGAACCGGCCGATGGGCTCGTTCATGTTCTTGGGCCCCACCGGCGTCGGCAAGACCG AGCTGACCAAGGCCCTGGCGGAGTACCTGTTCAACGACGAGACCGCGATGGTCCGCCTCGACATGTCCGAGTACATGGAG AAGCATTCGGTCTCGCGGCTGATCGGCGCGCCTCCGGGCTATGTCGGCTATGACGAGGGCGGCGCGCTCACCGAAGCGGT GCGGCGCCGGCCCTACCAGGTCGTGCTGTTCGACGAGATCGAGAAGGCGCATCCTGACGTCTTCAACGTCCTGTTGCAGG TGCTCGACGACGGCCGCCTGACCGATGGCCAGGGCCGCACCGTCGATTTCCGCAACACGCTGATCATCATGACCTCGAAC CTCGGTTCGGAGTTCTTGGTGAATCAACCCGAGGGCGAAGACACGTCGGCCGTGCGCGAGCAGGTGATGGGAATGGTGCG GGGACATTTCCGCCCCGAATTCCTCAACCGTGTCGACGAGATCATCCTGTTCCATCGCTTGCAGAGGAGCGAGATGGGCC GGATCGTCGAGATCCAGTTCGCCCGGCTGCAGAAGCTGCTGACCGATCGCAAGATCGTGCTGACGCTCGACGGCGCGGCC CGCGACTGGCTCGCCGCCAAGGGCTGGGATCCCGCCTACGGCGCACGGCCGCTCAAGCGGGTGATCCAGCGCTACCTCCA GGACCCGCTCGCCGAGATGATCCTGGCCGGCGACGTCAAGGACGGCGACAACGTCGCGATCTCGTCCGAAGGCAACGTGC TGACCTTCAACGGCAAGGCCCCGCAAACCGCGGAGATCGCCCAGTTCGAGGCGCCGGCGTCGAAGCGGAAGCTGAACTGA Protein sequence : MNIEKYTERSRGFIQSAQSLAVREGHQQFSTLHVLKVLLDDNEGLAAGLIDRAGGNSRAILKATEDALNKVPKVSGGGAG QIYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLTLEKTSEAGTILSKGGVTPQNLNAAIEALRKGRTADSATAENAY DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKKLL SLDLGALIAGAKYRGEFEERLKAVLQEVTGSEGTFILFIDEMHTLIGAGKGDGAMDASNLLKPALARGELHCIGATTLDE YQKHVEKDAALARRFQPIFVSEPSVEDTISILRGLKDKYEQHHGVRITDSALVASATLSNRYITDRFLPDKAIDLMDEAA ARLKMQVDSKPEELDSMDREIIRLKIEQEALKKESDAGSKSRLQTLEKELVELEEKSASLTARWSAEKNKLSDAQKLKAE LDGLRVELANAQRRGEFQKAGELAYGRIPELERQLADIEAKENSGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEKDKL LKMEDSLGKRVVGQAEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYME KHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSN LGSEFLVNQPEGEDTSAVREQVMGMVRGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGAA RDWLAAKGWDPAYGARPLKRVIQRYLQDPLAEMILAGDVKDGDNVAISSEGNVLTFNGKAPQTAEIAQFEAPASKRKLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-103 | 43 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-102 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-102 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_768044.1 | ATP-dependent protease ATP-binding subunit | VFG2076 | Protein | 9e-118 | 43 |
| clpB | NP_768044.1 | ATP-dependent protease ATP-binding subunit | VFG2084 | Protein | 1e-112 | 43 |
