Gene Information

Name : SE0008 (SE0008)
Accession : NP_763563.1
Strain : Staphylococcus epidermidis ATCC 12228
Genome accession: NC_004461
Putative virulence/resistance : Virulence
Product : truncated beta-hemolysin
Function : -
COG functional category : R : General function prediction only
COG ID : COG3568
EC number : -
Position : 13462 - 14466 bp
Length : 1005 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACGAGGTGTAACAATATTGAATTGGCAACGTAAATGTATACTAACTACTTTGTTGGTTTTAAGTAGTTTATTTTT
AGTATTTTCGACTATCACATATGCGAGTGAACGTGATTTTAAAGACAGTCTTAAAATCACTACACACAACGTGTATTTCT
TACCTACTGCTATCTACCCTAATTGGGGACAATCTCAGCGCGCTGATTTAATTTCAAAAGCAGATTACATTCAAAATCAA
GATGTCGTGATTCTAAATGAATTATTTGATAAAAAAGCTTCTAAAAGATTGTTAACACGTCTACATTCACAGTACCCCTA
TCAAACACCTATCGTTGGTAAGGGTACAGAAGGTTGGCAAAATACTTCTGGTACTTATAGAAAAATTAAAAAAGTAAGTG
GTGGCGTTGGTATTGTGAGTAAATGGCCTATCGTACAACAAGAACAACATATTTATAAAAAAGGTTGTGGGGCTGATATG
GCAGGTAATAAAGGCTTTGCCTACATTAAAATTAATAAGAATGGCAAATACCACCATATTATCGGAACACATCTACAAGC
TGAAGATCCAACATGCTTTAAAGGAAAAGATAAGGACATTAGACAGAGTCAAATGAGTGAAATTAAACAGTTTATCAAAG
ACAAGAATATCCCTAAAAATGAACCCGTCTATATCGGTGGTGACTTAAATGTCATTAAAGATTCAGATGAATATCAACAA
ATGGCAAATAACTTAAATGTTTCATTACCTACTCAATTCGATGGTAATGCATATAGTTGGGATACTAGCAGTAATAGTAT
TGCGAAATATAATTATCCTAAATTAGAACCTCAACACTTAGATTATATTTTATTAGATCGTGACCATGCACAACCAAGCT
CATGGCATAATGATACACATAGAGTGAAGTCACCAGAATGGTCCGTGAAATCTTGGGGTAAAACATACAAATACAATGAT
TACTCAGATCATTACCCACTCTCTGGCTATGCATCAAATGAATAG

Protein sequence : 
MKRGVTILNWQRKCILTTLLVLSSLFLVFSTITYASERDFKDSLKITTHNVYFLPTAIYPNWGQSQRADLISKADYIQNQ
DVVILNELFDKKASKRLLTRLHSQYPYQTPIVGKGTEGWQNTSGTYRKIKKVSGGVGIVSKWPIVQQEQHIYKKGCGADM
AGNKGFAYIKINKNGKYHHIIGTHLQAEDPTCFKGKDKDIRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYQQ
MANNLNVSLPTQFDGNAYSWDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYND
YSDHYPLSGYASNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAA70683.2 sphingomyelinase-c Virulence LIPI-2 Protein 2e-79 54
hlb NP_646757.1 truncated beta-hemplysin Not tested ¥ÕSa3 Protein 6e-68 53
hlb NP_375112.1 hypothetical protein Not tested ¥ÕSa3 Protein 4e-68 53
truncated-hlb NP_372527.1 hypothetical protein Not tested ¥ÕSa3 Protein 3e-68 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SE0008 NP_763563.1 truncated beta-hemolysin VFG0674 Protein 1e-79 54
SE0008 NP_763563.1 truncated beta-hemolysin VFG1798 Protein 1e-73 53