Gene Information

Name : SE1100 (SE1100)
Accession : NP_764655.1
Strain : Staphylococcus epidermidis ATCC 12228
Genome accession: NC_004461
Putative virulence/resistance : Virulence
Product : response regulator ArlR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1112731 - 1113390 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence : 
ATGACAAATATTTTAATTGTAGAAGATGAGCAAAATCTTGCTAGATTTATAGAGCTTGAGTTAACTCATGAAAATTATAC
TGTTGATATAGAGAATGATGGAAAGGTGGGTTTGGATAAAGCATTATCTAAGCCCTATGATTTATATATATTAGACTTAA
TGCTTCCAAACATAAATGGTCTAGAAATTTGTAGACAAATTCGTCAAAAAACAACTACTCCAATTATCATCATTACTGCG
AAAAGCGAGACATATGATAAAGTAGCTGGATTGGACTATGGGGCAGATGACTACATTGTAAAACCCTTTGATATAGAAGA
ATTGCTTGCAAGAATAAGAGCGGTATTGCGCAGACAGCCAGATAAAGATGTTTTAGATATCAATGGTATTATCATTGATA
AAGATGCCTTTAAAGTTACTGTTAATGGCCATCAATTAGAATTAACTAAAACAGAATACGATTTACTATATGTTTTAGCT
GAAAATCGTAACCACGTCATGCAACGTGAACAAATTCTCGATCACGTATGGGGGTATAATAGTGAAGTAGAAACGAATGT
CGTTGATGTTTATATTCGTTATTTACGTAATAAACTCAAACCTTTTAATAAAGAAAAATCCATAGAAACAGTACGTGGCG
TAGGGTATGTGATTCGATGA

Protein sequence : 
MTNILIVEDEQNLARFIELELTHENYTVDIENDGKVGLDKALSKPYDLYILDLMLPNINGLEICRQIRQKTTTPIIIITA
KSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRRQPDKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLA
ENRNHVMQREQILDHVWGYNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-34 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-33 44
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-27 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SE1100 NP_764655.1 response regulator ArlR AE015929.1.gene1106. Protein 3e-93 100
SE1100 NP_764655.1 response regulator ArlR NC_010079.5776364.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR NC_002952.2859858.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR NC_007622.3794948.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR NC_003923.1003417.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR NC_013450.8614146.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR NC_002951.3238224.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR NC_007793.3914065.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR NC_002758.1121390.p0 Protein 2e-82 85
SE1100 NP_764655.1 response regulator ArlR HE999704.1.gene1528. Protein 3e-47 56
SE1100 NP_764655.1 response regulator ArlR AE000516.2.gene3505. Protein 3e-31 44
SE1100 NP_764655.1 response regulator ArlR BAC0125 Protein 9e-35 43
SE1100 NP_764655.1 response regulator ArlR NC_005054.2598277.p0 Protein 6e-30 42
SE1100 NP_764655.1 response regulator ArlR NC_014475.1.orf0.gen Protein 6e-30 42
SE1100 NP_764655.1 response regulator ArlR AM180355.1.gene1830. Protein 1e-28 42
SE1100 NP_764655.1 response regulator ArlR DQ212986.1.gene4.p01 Protein 4e-28 42
SE1100 NP_764655.1 response regulator ArlR AF155139.2.orf0.gene Protein 2e-31 42
SE1100 NP_764655.1 response regulator ArlR BAC0308 Protein 1e-31 42
SE1100 NP_764655.1 response regulator ArlR BAC0197 Protein 1e-31 42
SE1100 NP_764655.1 response regulator ArlR FJ349556.1.orf0.gene Protein 2e-29 41
SE1100 NP_764655.1 response regulator ArlR AF253562.2.orf0.gene Protein 6e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SE1100 NP_764655.1 response regulator ArlR VFG0596 Protein 3e-34 45
SE1100 NP_764655.1 response regulator ArlR VFG1702 Protein 1e-27 43
SE1100 NP_764655.1 response regulator ArlR VFG1563 Protein 1e-27 42