|
Name : smpB (MYPE3530) Accession : NP_757740.1 Strain : Mycoplasma penetrans HF-2 Genome accession: NC_004432 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 455952 - 456392 bp Length : 441 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAAAATATTAGTTGTTAATAAGAAATTACATTTTAATTATGAAGTTTTAGAAAAAATAGAAGCTGGCATTGAATTAAA AGGAGTTGAGGTTAAATCAATTCATTTAAACAATGCTAATATTTCTGATTCTTATGTAATTTTTAAAAGAAATGAAGCAT ATATATTAAATATGAATATTGCCCCATATTCACATGGGAATATTTATAATGTTGATCCATTAAGAACAAGAAAATTATTG TTACATAAAAATGAAATAATAAAATATCAAATGAGAATTAAAAAAGAATCTTTAACTATGGTCCCTTCTAAAATTTATTG AAGAAAAAATAAATTAAAGGTAGAAATTGCATTAGCTAAAGGTAAAAAGCAATTTGATAAAAGACAAACAATTAAGGATA GAGATAATTCAAGAGAAGCTAGAAAACATATTAGAGTTTAA Protein sequence : MKILVVNKKLHFNYEVLEKIEAGIELKGVEVKSIHLNNANISDSYVIFKRNEAYILNMNIAPYSHGNIYNVDPLRTRKLL LHKNEIIKYQMRIKKESLTMVPSKIYWRKNKLKVEIALAKGKKQFDKRQTIKDRDNSREARKHIRV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-25 | 45 |
