Gene Information

Name : c5213 (c5213)
Accession : NP_757061.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Unknown
Product : transposase IS629
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4966657 - 4967547 bp
Length : 891 bp
Strand : -
Note : Escherichia coli O157:H7 ortholog: z3297

DNA sequence :
ATGATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTATGCAGCGAACTGCATATTGCCCCGTCAAC
GTATTACCACTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAG
AGATACAGCGCGTATACGATGAAAATCATCAGGTGTACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGAATC
AGGGTGGCCAGATGTACAGTGGCGCGCCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGCAC
TACCGTCAGCCGGAAAACCGTTGCCACAGGTGACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCTGACCAGCTGTGGG
TGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTTATCATTGATGTGTTTGCCGGATACATC
GTGGGGTGGCGGGTCTCATCGTCTATGGAAACGACATTCGTGCTGGATGCGCTGGAGCAGGCGTTGTGGGCCCGTCGACC
GTCCGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGAT
TACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGGTCTTTACAAAGCGGAG
GTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCG
ACGATTGCTGGGAAGGCTGGGCCATACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACAATGATC
TGGCAGCCTGA

Protein sequence :
MMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHQVYGVRKVWRQLLREGI
RVARCTVARLMAVMGLAGVLRGKKVRTTVSRKTVATGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYI
VGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAE
VIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNNDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-137 100
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 9e-135 98
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-135 98
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-134 98
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-134 98
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-108 98
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-101 98
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-131 97
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-135 97
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-130 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-135 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-131 97
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-93 97
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-131 97
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-131 96
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-131 96
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-131 96
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 8e-130 96
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-131 96
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-92 96
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-130 95
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-52 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
c5213 NP_757061.1 transposase IS629 VFG1602 Protein 7e-131 95