Gene Information

Name : c5197 (c5197)
Accession : NP_757045.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Unknown
Product : transposase insD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4952728 - 4953375 bp
Length : 648 bp
Strand : +
Note : Escherichia coli K-12 ortholog: b4273; Escherichia coli O157:H7 ortholog: z1825

DNA sequence : 
GTGTCGCGTGCGCAGCTAACATTACGGATGAAGGCATCTGATAACAAGCCAGATAAACGGCGTCAGAGACGCGATGAGGC
TGCGGATGCAGAAGTCTTATCGCGCATCCTGGATATCATTGGCGATATGCCAGCATATGGGTATCGCCGTGTCTGGGCGA
TACTCAGACGGCAGTCCCGAAATGAAGGCTTGCCGTTCGTGAATGCAAAGCGCGTTTACCGAATAATGAGCGAAAACAGC
CTGTTGTTGTTACATGACAAACCATCACGGCTGCAGCGGGAACATAAAGGCCGAATATCGGTGAAGGAAAGCGACCAGCG
TTGGTGTTCTGATGGCTTCGAGTTCGGTTGTGATGATGGCGAAAAAGTCCGGGTTACGTTCGCCCTGGACTGTTGTGATC
GTGAAGCCATCGACTGGGCAGCCAGTACGGGAGGTTACGATAAAGCGACAGTACAGGATGTGATGTCAGGAGCGATAGAA
AAAGGCTTTGGCGATAAAGTGCCGGAAGAGCCCATCCAGTGGCTGACAGATAACGGTTCAGCGTACAGAGCGCATGAAAC
ACGGCAGTTCGCCAGAGAGCTGAATCTGGAGCCCTGCACGACGGCAGTCAGCAGTCCTCAGAGTAATGGAATGGCAGACG
GTTCGTGA

Protein sequence : 
MSRAQLTLRMKASDNKPDKRRQRRDEAADAEVLSRILDIIGDMPAYGYRRVWAILRRQSRNEGLPFVNAKRVYRIMSENS
LLLLHDKPSRLQREHKGRISVKESDQRWCSDGFEFGCDDGEKVRVTFALDCCDREAIDWAASTGGYDKATVQDVMSGAIE
KGFGDKVPEEPIQWLTDNGSAYRAHETRQFARELNLEPCTTAVSSPQSNGMADGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5197 NP_757045.1 transposase insD Not tested PAI II CFT073 Protein 1e-91 100
insD AAZ04432.1 IS2 transposase Not tested PAI I APEC-O1 Protein 2e-91 99
insD YP_854263.1 IS2 transposase Not tested PAI I APEC-O1 Protein 2e-91 99
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 2e-82 89
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 8e-58 64
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 2e-58 60
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 8e-57 59
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 1e-57 59
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 1e-57 59
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 1e-57 59
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 6e-58 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
c5197 NP_757045.1 transposase insD VFG0649 Protein 3e-58 64
c5197 NP_757045.1 transposase insD VFG1732 Protein 7e-59 60
c5197 NP_757045.1 transposase insD VFG0621 Protein 3e-58 59
c5197 NP_757045.1 transposase insD VFG0608 Protein 3e-58 59