Gene Information

Name : papF_2 (c5180)
Accession : NP_757028.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Virulence
Product : PapF protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 4941885 - 4942415 bp
Length : 531 bp
Strand : -
Note : Residues 11 to 176 of 176 are 92.81 pct identical to residues 1 to 167 of 167 from SwissProt.40 : >sp|P42187|PRSF_ECOLI MINOR FIMBRIAL PROTEIN PRSF PRECURSOR

DNA sequence : 
ATGTTTTCTGTACCGCTCTCCGGAGGGGGAATGGCTCGTTTATCATTATTTATATCGTTGCTTCTGACATCGGTCGCTGT
ACTGGCTGATGTGCAGATTAACATCAGGGGAAATGTTTATATCCCCCCATGCACCATTAATAACGGGCAGAATATTGTTG
TCGATTTTGGGAATATTAATCCTGAGCACGTGGACAACTCACGTGGTGAGGTAACAAAAACCATAAGCATATCCTGTACG
TATAAGAGTGGCTCACCCTGGATAAAGGTCACAGGTAATGCAATGGCTGGGCAGACTAATGTACTGGCAACAAATATAGC
CAATTTTGGTATAGCGTTGTATCAGGGAAAAGGAATGTCAACACCTCTTACATTAGGTAATGGTTCAGGAAATGGTTACA
GAGTGACAGCAGGTCTGGACACAGCACGTTCAACGTTCACCTTTACTTCAGTGCCCTTTCGTAATGGCAGCAGGACACTG
AATGGCGGGGATTTCCGGACCACGGCCAGTATGAGCATGATTTATAACTGA

Protein sequence : 
MFSVPLSGGGMARLSLFISLLLTSVAVLADVQINIRGNVYIPPCTINNGQNIVVDFGNINPEHVDNSRGEVTKTISISCT
YKSGSPWIKVTGNAMAGQTNVLATNIANFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSRTL
NGGDFRTTASMSMIYN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papF NP_755459.1 PapF protein Virulence PAI I CFT073 Protein 3e-77 100
papF_2 NP_757028.1 PapF protein Virulence PAI II CFT073 Protein 3e-77 100
papF YP_002414010.1 Fimbrial adapter PapF Not tested Not named Protein 4e-77 99
papF AAZ04419.1 P pilus minor tip component Virulence PAI I APEC-O1 Protein 7e-77 99
papF YP_854249.1 P pilus minor tip component PapF Virulence PAI I APEC-O1 Protein 9e-77 99
prfF CAD42024.1 PrfF protein Virulence PAI II 536 Protein 3e-67 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papF_2 NP_757028.1 PapF protein VFG0900 Protein 9e-78 100
papF_2 NP_757028.1 PapF protein VFG0889 Protein 9e-78 100
papF_2 NP_757028.1 PapF protein VFG1543 Protein 1e-67 94