Gene Information

Name : c5178 (c5178)
Accession : NP_757026.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Unknown
Product : transposase IS629
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4939758 - 4940645 bp
Length : 888 bp
Strand : +
Note : Escherichia coli O157:H7 ortholog: z3297

DNA sequence :
ATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGGTATGCAGTGAACTGCATATTGCCCCGTCAACGTA
TTACCATTGTCAGCAGCAGCGGCATCATCCTGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAGAGAGA
TACAGCGCGTATACGATGAAAATCATCAGGTGTACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGAATCAGG
GTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCGGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATCGTG
GGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTC
CGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCGACG
ATTGCTGGAAAGGCTGGGCCATACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGG
CAGCCTGA

Protein sequence :
MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-136 100
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-109 100
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-93 99
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-134 99
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-134 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-135 99
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-100 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-93 98
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-134 98
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-131 97
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 7e-134 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-131 97
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-131 97
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-131 97
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-130 97
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 6e-134 97
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-131 97
Z1198 NP_286733.1 transposase Not tested TAI Protein 6e-131 96
Z1638 NP_287141.1 transposase Not tested TAI Protein 6e-131 96
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-129 96
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-129 95
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 5e-52 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
c5178 NP_757026.1 transposase IS629 VFG1602 Protein 9e-130 95