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Name : ycbS (c4212) Accession : NP_756076.1 Strain : Escherichia coli CFT073 Genome accession: NC_004431 Putative virulence/resistance : Virulence Product : outer membrane usher protein ycbS Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3995436 - 3998030 bp Length : 2595 bp Strand : - Note : Escherichia coli K-12 ortholog: b0940; Escherichia coli O157:H7 ortholog: z5915 DNA sequence : ATGAACCTAAAGCTCAAAAGATGCGAATATTGGATGGCGGCACAAAAGCAGATGAAACGGGTTGTGCCGCTTCTTCTGGT TATTATGCCTGCATGTTCAATCGCGGGAATGCGCTTTAACCCTGCTTTTCTGTCGGGTGATACTGAAGCTGTTGCTGACT TATCCCGCTTCGAGAAAGGGATGACTTATCTTCCTGGTAGCTATGAAGTCGAAGTTTGGGTCAATGATTCCCCTTTACTC TCTCGTACTGTAACTTTTAAAGCAGACGATGAGAATCAACTGATTCCCTGCCTTTCACTTGCTGACTTATTAAGCCTTGG AATTAACAAAAATGCGCTGCCAGAGCAGGCTTTGGCTTCATCTGAAAATAGTTGCCTTGATTTGCGTATCTGGTTTCCCG ATGTGCATTACATGCCGGAGCTGGATGCACAGAGACTTAAACTGACCTTTCCACAGGCGATAATAAAACGTGACGCTCGC GGATATATTCCACCAGAACAGTGGGATAACGGTATTACAGCTTTTTTGCTGAATTATGACTTTTCTGGTAATAACGATCG TGGTGATTACTCTTCAAATAACTATTATTTAAATCTTCGCGCTGGGATCAATATTGGTGCATGGCGTTTTCGCGATTATT CAACCTGGAGTCGTGGGAGTAATTCAGCAGGTAAACTGGAGCATATCAGTAGTACGTTGCAGCGCGTTATTATTCCTTTC AGAAGTGAATTAACGCTAGGAGATACATGGTCATCATCAGATGTTTTCGACAGTGTTAGTATTCGTGGCATAAAACTGGA ATCTGACGAAAATATGTTGCCCGATAGTCAAAGTGGTTTCGCTCCCACGGTGCGCGGAATTGCGAAAAGTCGCGCTCAGG TAACAATCAAACAGAATGGTTATGTCATTTATCAAACCTATATGCCGCCGGGACCGTTTGAGATTAGCGATCTTAACCCG ACATCATCTGCGGGAGATCTGGAAGTTACCATCAAAGAGTCTGATAATTCAGAAACTGTCTATACCGTACCTTATGCCGC TGTCCCCATCCTGCAACGAGAAGGTCATTTAAAATATTCTACTACGGTTGGCCAATATCGAAGCAATAGCTATAACCAGA AAAGTCCTTATGTATTTCAGGGGGAATTAATTTGGGGTTTACCCTGGGATATTACGGCTTATGGTGGGGCACAATTCTCT GAGGATTACCGGGCGTTGGCGCTCGGCCTTGGCCTGAATCTGGGTGTATTTGGTGCAACATCGTTTGATGTTACTCAGGC TAACAGTTCGCTTGTGGATGGGAGCAAACATCAAGGGCAATCTTATCGTTTTCTTTATTCCAAATCGTTAGTTCAGACAG GAACAGCATTCCATATTATTGGCTATCGTTATTCAACCCAGGGCTTTTACACTTTAAGTGATACGACATACCAACAAATG TCAGGGACTGTTGTTGATCCAAAAACGTTAGATGATAAAGATTACGTTTATAACTGGAATGATTTTTATAACTTGCGTTA TAGCAAACGTGGAAAATTTCAGGCTAGTGTATCGCAACCTTTCGGTAACTACGGGTCTATGTATTTATCGGCTAGTCAGC AAACATACTGGAATACTGATAAAAAAGATTCTTTATACCAAGTTGGTTATAACACCAGTATTAAGGGTATCTATCTAAAT GTTGCGTGGAATTACAGTAAATCACCAGGGACAAATGCGGATAAAATTGTCTCGCTAAATGTCTCATTACCTATAAGTAA TTGGTTATCTTCCACGAATGATGGGCGCTCATCATCGAATGCCATGACTGCAACGTATGGTTATAGTCAGGATAACCACG GACAGGTAAACCAATATACGGGGGTATCTGGTTCTCTGTTGGAGCAGCATAATCTCAGTTATAACATACAACATGGTTTT GCTAATCAGGATAATAGCAGTAGTGGTTCTGTTGGTGTTAATTATCGTGGGGCATATGGTTCCTTGAATTCCGCCTACAG TTACGATAATGAAGGTAATCAACAAATAAACTATGGCATCAGTGGTGCTCTTGTTGTACATGAAAATGGTCTTACGTTGA GTCAACCATTAGGTGAAACTAATGTTTTGATAAAAGCGCCTGGAGCGAATAATGTGGATGTTCAGCGGGGGACAGGAATA TCCACTGACTGGCGTGGATATGCAGTTGTTCCTTATGCAACAGAATATAGACGTAATAATATTTCATTAGATCCTATGTC AATGAATATGCATACTGAACTGGATATCACTTCCACTGAAGTTATTCCGGGAAAAGGTGCGTTAGTTCGTGCAGAGTTTG CTGCTCATATCGGTATTCGTGGTTTGTTCACAGTTCGTTATCGTAATAAATCAGTCCCATTCGGTGCTACAGCCAGCGCT CAGATTAAAAACAGTAGTCAAATTACCGGGATTGTCGGCGATAATGGACAACTTTATCTCTCAGGATTGCCTTTAGAAGG TGTTATTAATATCCAGTGGGGAGACGGTGTTCAGCAAAAATGTCAGGCTAATTACAAGCTCCCTGAAACAGAACTGGATA ATCCTGTTAGCTATGCAACTCTGGAGTGCCGCTAA Protein sequence : MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLL SRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDAR GYIPPEQWDNGITAFLLNYDFSGNNDRGDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEISDLNP TSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYSTTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFS EDYRALALGLGLNLGVFGATSFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNTSIKGIYLN VAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGF ANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPGANNVDVQRGTGI STDWRGYAVVPYATEYRRNNISLDPMSMNMHTELDITSTEVIPGKGALVRAEFAAHIGIRGLFTVRYRNKSVPFGATASA QIKNSSQITGIVGDNGQLYLSGLPLEGVINIQWGDGVQQKCQANYKLPETELDNPVSYATLECR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-171 | 46 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 3e-171 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ycbS | NP_756076.1 | outer membrane usher protein ycbS | VFG0446 | Protein | 2e-173 | 47 |
| ycbS | NP_756076.1 | outer membrane usher protein ycbS | VFG0876 | Protein | 3e-180 | 46 |
| ycbS | NP_756076.1 | outer membrane usher protein ycbS | VFG1645 | Protein | 2e-171 | 44 |
| ycbS | NP_756076.1 | outer membrane usher protein ycbS | VFG0912 | Protein | 5e-171 | 44 |
| ycbS | NP_756076.1 | outer membrane usher protein ycbS | VFG0454 | Protein | 1e-162 | 43 |
