Gene Information

Name : hlyC (c3569)
Accession : NP_755444.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Virulence
Product : hemolysin C
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2994
EC number : -
Position : 3418210 - 3418884 bp
Length : 675 bp
Strand : +
Note : Residues 55 to 224 of 224 are 97.64 pct identical to residues 1 to 170 of 170 from SwissProt.40 : >sp|P09984|HLC1_ECOLI HEMOLYSIN-ACTIVATING LYSINE-ACYLTRANSFERASE HLYC (TOXIN-ACTIVATING PROTEIN C, J96) (HEMOLYSIN C)

DNA sequence :
TTGGTTTGCTTTTTTTTACCTGCCACCGCAATGAATGCTTTTTTTATGTTAATGTGCGTTATGAAACTAAATGCAAGAAA
CATATTTAAAGGATTAATATCGTTCTCTCACAGACTCCGTTTACTTATTCAAGAATATAATTTAATTTATAGTGAGCTTA
TTATGAATATGAACAATCCATTAGAGGTTCTTGGGCATGTATCCTGGCTCTGGGCCAGTTCCCCATTACACAGAAACTGG
CCAGTCTCTTTGTTTGCAATAAATGTATTACCTGCAATACGGGCTAACCAATATGCTTTATTAACCCGGGATAATTACCC
TGTTGCATATTGTAGTTGGGCTAATTTAAGTTTAGAAAATGAAATTAAATATCTTAATGATGTTACCTCATTAGTCGCAG
AAGACTGGACTTCAGGTGATCGTAAATGGTTCATTGACTGGATTGCTCCTTTCGGGGATAACGGTGCCCTGTACAAATAT
ATGCGAAAAAAATTCCCTGATGAACTATTCCGAGCCATCAGGGTGGATCCCAAAACTCATGTTGGTAAAGTATCAGAATT
TCACGGAGGTAAAATTGATAAACAGTTAGCGAATAAAATTTTTAAACAATATTACCACGAGTTAATAACTGAAGTAAAAA
ACAAGACAGATTTCAATTTTTCATTAACAGGTTAA

Protein sequence :
MVCFFLPATAMNAFFMLMCVMKLNARNIFKGLISFSHRLRLLIQEYNLIYSELIMNMNNPLEVLGHVSWLWASSPLHRNW
PVSLFAINVLPAIRANQYALLTRDNYPVAYCSWANLSLENEIKYLNDVTSLVAEDWTSGDRKWFIDWIAPFGDNGALYKY
MRKKFPDELFRAIRVDPKTHVGKVSEFHGGKIDKQLANKIFKQYYHELITEVKNKTDFNFSLTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyC NP_755444.1 hemolysin C Virulence PAI I CFT073 Protein 1e-102 100
hlyC CAD42040.1 HlyC protein Virulence PAI II 536 Protein 2e-75 99
hlyC CAD33758.1 hemolysin C Virulence PAI I 536 Protein 3e-75 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hlyC NP_755444.1 hemolysin C VFG0905 Protein 4e-103 100
hlyC NP_755444.1 hemolysin C VFG1559 Protein 9e-76 99
hlyC NP_755444.1 hemolysin C VFG1499 Protein 1e-75 99
hlyC NP_755444.1 hemolysin C VFG0842 Protein 8e-56 67