Gene Information

Name : c1275 (c1275)
Accession : NP_753189.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1231442 - 1231897 bp
Length : 456 bp
Strand : +
Note : Residues 9 to 151 of 151 are 98.60 pct identical to residues 1 to 143 of 143 from GenPept.129 : >gb|AAK00476.1| (AF200692) unknown [Shigella flexneri 2a]

DNA sequence :
ATGATTCACCTGTTCAAAACCTGCATGATTACCGCCTTCATTCTGGGGTTAACGTGGTCTGCCCCACTCCGGGCACAGGA
TCAACGTTACATCAGTATACGCAATACAGATACGATATGGCTCCCGGGAAATATTTGTGCTTACCAGTTCCGGCTGGATA
ATGGCGGAAACGATGAAGGATTTGGCCCCCTCACCATCACTCTGCAACTCAAAGACAAATATGGTCAGACGCTGGTGACC
AGAAAAATGGAAACGGAAGCCTTTGGTGACAGTAATGCCACGCGAACCACAGACGCATTTCTGGAAACGGAGTGCGTGGA
AAATGTCGCCACAACCGAAATCATTAAAGCAACTGAAGAAAGTAACGGCCATCGTGTCAGTCTGCCGTTATCGGTTTTCG
ATCCCCAGGACTACCATCCACTGCTGATTACCGTTTCCGGAAAAAATGTTAACTGA

Protein sequence :
MIHLFKTCMITAFILGLTWSAPLRAQDQRYISIRNTDTIWLPGNICAYQFRLDNGGNDEGFGPLTITLQLKDKYGQTLVT
RKMETEAFGDSNATRTTDAFLETECVENVATTEIIKATEESNGHRVSLPLSVFDPQDYHPLLITVSGKNVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SF2993 NP_708767.1 hypothetical protein Not tested SHI-1 Protein 4e-67 99
unnamed AAK00476.1 unknown Not tested SHI-1 Protein 4e-62 99
unnamed AAW51752.1 Aec69 Not tested AGI-3 Protein 2e-67 99
unnamed ADD91706.1 hypothetical conserved protein Not tested PAI-I AL862 Protein 2e-67 99
S3197 NP_838481.1 hypothetical protein Not tested SHI-1 Protein 4e-67 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
c1275 NP_753189.1 hypothetical protein VFG0657 Protein 1e-67 99