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Name : focD (c1242) Accession : NP_753156.1 Strain : Escherichia coli CFT073 Genome accession: NC_004431 Putative virulence/resistance : Virulence Product : F1C fimbrial usher Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1190123 - 1192801 bp Length : 2679 bp Strand : + Note : Escherichia coli K-12 ortholog: b4317; Escherichia coli O157:H7 ortholog: z5915 DNA sequence : TTGTGTTTGGCTGCTGATTTTATTTTTTCGCTCAGTGTGGGGGCTGACATGTTTTTCGGAGATGGCGGACAGCTCCTGTC TGATAAATCACTGACCGGCTCTGCTGGCGGGGGTAATAACAGAATGAAATTTAATATACTGCCGCTGGCATTTTTTATCG GGATAATTGTTTCTCCGGCCCGGGCTGAGCTCTATTTTAATCCGCGTTTTCTGTCTGATGACCCGGATGCGGTTGCGGAC CTGTCTGCATTTACACAGGGGCAGGAGCTTCCGCCAGGCGTGTACCGGGTGGATATTTATCTGAATGATACGTATATCTC AACCCGTGACGTGCAGTTTCAGATGAGTCAGGACGGGAAGCAACTTGCCCCCTGCCTGAGTCCGGAGCATATGAGTGCGA TGGGGGTAAACCGTTATGCCGTGCCGGGTATGGAGAGACTGCCGGCTGACACCTGCACATCACTGAATTCCATGATTCAG GGTGCCACATTCCGGTTTGATGTCGGGCAGCAGCGATTGTACCTGACCGTTCCTCAGTTATATATGAGTAATCAGGCCCG TGGTTATATTGCGCCGGAATACTGGGATAACGGAATTACAGCGGCATTGCTGAATTATGACTTCAGTGGTAATCGGGTGC GCGACAGCTATGGTGGCACCAGCGATTATGCCTATCTGAATCTGAAAACAGGACTGAATATCGGGAGCTGGCGTCTTCGG GACAACACCAGCTGGAGTTACAGTGCCGGAAAGGGGTACAGCCAGAATAACTGGCAGCACATTAACACCTGGCTGGAGCG GGATATAGTTTCCCTGCGCTCCCGTCTGACGATGGGGGACAGTTATACCCGGGGGGATATTTTTGACGGTGTAAATTTCA GGGGGATTCAACTGGCCTCTGATGACAATATGGTTCCGGACAGCCAGAGAGGGTATGCACCGACAATTCACGGTATTTCC CGGGGAACATCCCGGATTAGTATCCGCCAGAACGGGTATGAAATTTACCAGAGTACGCTACCTCCAGGCCCGTTCGAGAT AAACGATATTTATCCGGCCGGGAGTGGAGGTGACTTACAGGTAACCCTGCAGGAAGCTGATGGCAGTGTACAGCGATTTA ATGTGCCATGGTCTTCGGTGCCTGTACTGCAACGTGAAGGGCATCTGAAATATGCTCTCAGTGCCGGAGAGTTTCGCAGT GGCGGACATCAGCAGGATAATCCCCGTTTTGCTGAAGGAACGCTGAAGTATGGTCTGCCGGCAGGCTGGACGGTGTATGG AGGAGCCTGGATAGCTGAACGCTACCGTGCCTTCAATCTGGGGGTGGGTAAAAACATGGGCTGGCTGGGCGCTGTTTCAC TGGATGCCACCCGTGCGAATGCCCGGTTACCGGATGAAAGCCGGCATGACGGTCAGTCATATCGTTTTCTGTATAACAAG TCACTGACGGAAACAGGGACAAATATCCAGTTAATCGGATACCGCTACTCCACACGGGGCTATTTCAGCTTTGCTGATAC CGCCTGGAAGAAAATGAGTGGTTACAGTGTTCTTACCCAGGACGGAGTGATACAGATACAGCCGAAGTATACGGATTACT ACAATCTGGCTTACAACAAGCGGGGAAGGGTGCAGGTGAGTATCAGCCAGCAGACGGGGGAATCGTCAACGTTGTATCTG AGTGGCAGCCACCAGAGTTACTGGGGAACGGACAGGACGGACCGTCAGCTTAATGCTGGCTTTAACTCATCTGTGAATGA CATCAGCTGGTCCCTGAACTACAGCCTGTCCCGGAATGCATGGCAACATGAAACTGACCGGATACTGTCATTTGATGTCA GCATTCCGTTCAGCCACTGGATGCGTTCGGACAGCACATCTGCATGGAGAAACGCCAGTGCCCGTTACAGTCAGACCCTG GAGGCTCACGGACAGGCTGCCAGTACAGCAGGGCTGTATGGCACATTGCTGGGGGACAATAATCTGGGATACAGCATCCA GAGTGGTTATACCCGGGGAGGGTATGAGGGGAGCAGTAAAACAGGATATGCCTCTCTGAATTACAGAGGGGGATACGGTA ATGCCAGTGCAGGATACAGTCACAGTGGGGGCTACCGGCAACTGTATTATGGGCTGAGTGGCGGTATTCTGGCACATGCC AATGGTCTGACACTGAGCCAGCCTCTGGGAGATACGCTGATTCTTGTCCGTGCACCAGGTGCATCTGATACGCGCATTGA AAACCAGACGGGGGTGTCTACAGACTGGAGGGGGTATGCTGTACTGCCTTATGCAACAGACTATCGTGAAAACCGGGTGG CACTGGATACCAACACCCTTGCAGATAATGTTGATATAGAGAATACCGTGGTCAGCGTCGTGCCCACGCATGGTGCCGTT GTGCGGGCTGACTATAAAACCCGTGTGGGTGTGAAAGTGCTGATGACGCTGATGAGAAACGGGAAAGCAGTTCCTTTTGG CTCTGTCGTTACGGCCAGAAACGGGGGGAGCAGTATCGCCGGAGAGAATGGTCAGGTTTATCTGAGCGGAATGCCTCTGT CAGGACAGGTTAGTGTGAAATGGGGGAGTCAGACCACGGACCAGTGTACTGCAGATTATAAATTACCGAAGGAAAGCGCC GGACAGATATTAAGTCATGTCACGGCTAGTTGCAGGTAA Protein sequence : MCLAADFIFSLSVGADMFFGDGGQLLSDKSLTGSAGGGNNRMKFNILPLAFFIGIIVSPARAELYFNPRFLSDDPDAVAD LSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQLAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQ GATFRFDVGQQRLYLTVPQLYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGSWRLR DNTSWSYSAGKGYSQNNWQHINTWLERDIVSLRSRLTMGDSYTRGDIFDGVNFRGIQLASDDNMVPDSQRGYAPTIHGIS RGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSGGDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRS GGHQQDNPRFAEGTLKYGLPAGWTVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRHDGQSYRFLYNK SLTETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNLAYNKRGRVQVSISQQTGESSTLYL SGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSLSRNAWQHETDRILSFDVSIPFSHWMRSDSTSAWRNASARYSQTL EAHGQAASTAGLYGTLLGDNNLGYSIQSGYTRGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLSGGILAHA NGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRVALDTNTLADNVDIENTVVSVVPTHGAV VRADYKTRVGVKVLMTLMRNGKAVPFGSVVTARNGGSSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESA GQILSHVTASCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 99 |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| focD | NP_753156.1 | F1C fimbrial usher | VFG0912 | Protein | 0.0 | 100 |
| focD | NP_753156.1 | F1C fimbrial usher | VFG1645 | Protein | 0.0 | 99 |
| focD | NP_753156.1 | F1C fimbrial usher | VFG0876 | Protein | 0.0 | 65 |
| focD | NP_753156.1 | F1C fimbrial usher | VFG0446 | Protein | 5e-180 | 47 |
| focD | NP_753156.1 | F1C fimbrial usher | VFG0454 | Protein | 9e-170 | 41 |
