Gene Information

Name : c1224 (c1224)
Accession : NP_753140.1
Strain : Escherichia coli CFT073
Genome accession: NC_004431
Putative virulence/resistance : Unknown
Product : transposase insF
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1174628 - 1175380 bp
Length : 753 bp
Strand : -
Note : Escherichia coli K-12 ortholog: b2089; Escherichia coli O157:H7 ortholog: z1573

DNA sequence :
ATGTCCGCCTTAAATGACAACTGGCGGAGCAGGCTGAGGAACTGGCCATCCTCCAAAAGGCCGCGACAACTTCGCGAAGC
GCCTGAAATGAAGTATGTCTTCATCGAAAATCATCGGGCAGAGTTCAGCATCAAAGCGATGTGTCGTGTACTTCGGGTTG
CCCGCAGCGGCTGGTATGTCTGGCTCTGGCGTCGTCACCAGATGAGCCTGCGCCAACAGTTTCGGCTCACCTGCGATGCC
GCTGTCCATAAGGCATTCTTTGAGGCAAAGCAGCGATACGGTGCTCCCCGCCTTGCTGACGAAATGCCGGAGTTCAATAT
TAAAACCATTGCCGCCAGCCTGCGTCGTCAGGGGCTGCGGGCGAAAGCCAGCCGGAAGTTCAGCCCGGTCAGCTACCGTG
CACATGGCCTGCCCGTATTGGAGAATCTGCTGGAGCAGGACTTCAGCGCCAGCGGCCCGAACCAGAAGTGGGCGGGTGAC
ATCACGTACTTGCGTACCGATGAGGGCTGGTTGTATCTCGCAGTAGTCATCGACCTGTGGTCACGCGCCGTCATTGGCTG
GTCGATGTCACTGCGAATGACAGCACAACTGGCCTGTGATGCACTGCAAATGGCGTTGTGGCGGAGAAGACGCCCGGAAA
GCGTCATTGTTCATACGGACCGTGGTGGTCAATACTGTTCAGGGGATTATCAGGCGCTGCTGAAGCTGACACAACCTGCG
TGGCAGTATGAGTGCGAAAGGCTACTGTTATGA

Protein sequence :
MSALNDNWRSRLRNWPSSKRPRQLREAPEMKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLWRRHQMSLRQQFRLTCDA
AVHKAFFEAKQRYGAPRLADEMPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFSASGPNQKWAGD
ITYLRTDEGWLYLAVVIDLWSRAVIGWSMSLRMTAQLACDALQMALWRRRRPESVIVHTDRGGQYCSGDYQALLKLTQPA
WQYECERLLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 6e-93 99
tra5_2 AAC28569.1 transposase Tra5 Not tested LEE Protein 1e-62 83
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-76 83
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-76 83
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-75 83
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-31 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-31 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-31 41
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-31 41
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-31 41
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-31 41
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-31 41
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-31 41
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 4e-31 41
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 3e-31 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 3e-31 41
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
c1224 NP_753140.1 transposase insF VFG1631 Protein 3e-93 99
c1224 NP_753140.1 transposase insF VFG1706 Protein 2e-31 41