|
Name : CE0381 (CE0381) Accession : NP_736991.1 Strain : Corynebacterium efficiens YS-314 Genome accession: NC_004369 Putative virulence/resistance : Virulence Product : lipopolysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 414425 - 415708 bp Length : 1284 bp Strand : - Note : similar to D14156-2|BAA03192.1| percent identity: 62 in 422 aa DNA sequence : ATGAGCACACCTAAAATATCCGATGTAAAAATTGCTGTGATTGGCCTAGGGTACGTGGGGTTACCTCTCGCAGTGGAGTT TGGGAAGCAGTTTCCCGTTATTGGATATGACATCAATGAAACCCGAATCGCGGAATTAAAAGAGGGTGTTGACAAAACTC TTGAGTCCTCTAAAGAAGAGCTTATTTCAGCTACGCAGCTGCAATTCACGGCAAACCCAGAGGATCTTCGTGCTGCAAAC GTTTACCTCGTAACGACCCCTACGCCCATTGATGAGCACAAGAAACCCGATCTCAGGATCATTCTTGCTGCGACCCGCAC AATTGCATCAACTATGAATCCTGGCGATATTGTCATCTACGAATCTACGGTTTATCCGGGCGTAACCGAGGAAGAGTGTG TGCCGGTAATTGAAAAGGTTAGCGGACTGAAGTTCAATGAATCTTTCTACGCAGGCTACAGTCCAGAACGAATCAACCCA GGCGACAAAATACACCGTTTGCCAAATATTGTGAAGATAACCTCTGGATCCACACCAGAGGTCGCAGAGTTTGTAGATGA GTTGTATCGAACCATCATCACTGCTGGAACGCACAAGGCCTCAAGCATCAAGGTAGCAGAAGCTGCGAAGGTAATTGAAA ATACTCAGCGTGACGTCAACATCGCATTGATCAACGAATTGGCACTGCTTTTCAACAAGATGGATATTGATACTCAGGCT GTTCTGGAGGCAGCGGGAACTAAGTGGAATTTCCTGCCATTCCGCCCCGGCCTCGTGGGTGGCCATTGTATTGGTGTTGA CCCTTACTACTTGACACATAAGGCGCAGGCAGTTGGGCATAATCCCGAGATCATTCTTGCCGGAAGGCGACTAAATGATT CGATGGGTCAGTACATTGCCAGCCAGTTAGTCAAAGCAATGCTCCGTAAGTCCACGCGTATTGAGAACGCGCGAGTTTTG ATTCTCGGACTTACATTCAAAGAGAATACTCCGGATATTCGTAATACACGCGTGGTGGACATCATCGCGGAACTGGAAGA CTACGGCATTTCAGTTGATGCTTATGATCCCTGGGCTGCCCCATTCGAAGTAGAGCACGAGTACGGGATAACTCTTAAAA GTGAATTGGAACCTTCAACCTATGATTCCGTAATCGTTGCGGTTGCCCACAGGGAATTCATCGAAATGGGAGCACAAGCA ATTCGTGATCTCGGAAAACCTGAATCTATTGTTTATGACCTCAAATACGTGCTCGATAAGGCCGAGTCCGACCTACGTCT TTAA Protein sequence : MSTPKISDVKIAVIGLGYVGLPLAVEFGKQFPVIGYDINETRIAELKEGVDKTLESSKEELISATQLQFTANPEDLRAAN VYLVTTPTPIDEHKKPDLRIILAATRTIASTMNPGDIVIYESTVYPGVTEEECVPVIEKVSGLKFNESFYAGYSPERINP GDKIHRLPNIVKITSGSTPEVAEFVDELYRTIITAGTHKASSIKVAEAAKVIENTQRDVNIALINELALLFNKMDIDTQA VLEAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAVGHNPEIILAGRRLNDSMGQYIASQLVKAMLRKSTRIENARVL ILGLTFKENTPDIRNTRVVDIIAELEDYGISVDAYDPWAAPFEVEHEYGITLKSELEPSTYDSVIVAVAHREFIEMGAQA IRDLGKPESIVYDLKYVLDKAESDLRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-134 | 63 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-134 | 63 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-111 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CE0381 | NP_736991.1 | lipopolysaccharide biosynthesis protein | VFG0431 | Protein | 7e-135 | 63 |
