Gene Information

Name : gbs1948 (gbs1948)
Accession : NP_736381.1
Strain : Streptococcus agalactiae NEM316
Genome accession: NC_004368
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2024085 - 2024762 bp
Length : 678 bp
Strand : -
Note : similar to two-component response regulator (PhoB)

DNA sequence : 
ATGATATATTGTGTTGAAGATGATGCTGATATTCGCGAAATGATGCTCTATACTTTGCAAATGGCAGGTTTTAAAGCTCA
AGGATTTTCGAGTTCAGAGCTTTTTTGGGAAGCTATTCAGGAGAAAGTTCCAGACTTGATTTTGCTTGATATTATGTTGC
CGGGAGATGATGGTTTGACTATTTTAGAGCGTTTAAGGAGAAAACATCAAACGGAAATGATACCAGTAATCATGACAACT
GCTAAAGGTAGTGAGTATGATAAAGTTAAAGGGTTAGATCTTGGAGCAGATGATTATCTCGTCAAACCTTTTGGGATGAT
GGAAATGATTTCACGAATAAAAGCAGTCTTGAGACGTAGCCGCCAAGTAGATTCAAAAGCTCATATTATCATTGGAAATT
TAGAGATTGATCCGACTAATTATTGGGTCAAAAGGGGAACGGAAAAAATCCACTTAACCCTAAAGGAATTTGAGTTATTA
GTATTATTCTTCCGTAATCCCAATAGAGTCTTTACAAGGCAAGAACTTCTGGATAAGGTTTGGGGAGAACAATTTTTAGG
AGAAACTAGAACTGTGGATGTTCACATTGGGACACTGCGAACAAAACTTGGTGAGGATGGCTATTTGATTGCTACAGTAA
GGGGAGTTGGATACCGTTTGGAGGAAAGACATGACTAA

Protein sequence : 
MIYCVEDDADIREMMLYTLQMAGFKAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTILERLRRKHQTEMIPVIMTT
AKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSRQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELL
VLFFRNPNRVFTRQELLDKVWGEQFLGETRTVDVHIGTLRTKLGEDGYLIATVRGVGYRLEERHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-27 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-26 45
vanRB YP_001698483.1 regulatory protein Not tested Not named Protein 2e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gbs1948 NP_736381.1 hypothetical protein NC_010079.5776364.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein NC_002952.2859858.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein NC_007622.3794948.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein NC_003923.1003417.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein NC_013450.8614146.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein NC_002951.3238224.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein NC_007793.3914065.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein NC_002758.1121390.p0 Protein 1e-28 46
gbs1948 NP_736381.1 hypothetical protein BAC0197 Protein 4e-31 46
gbs1948 NP_736381.1 hypothetical protein AE015929.1.gene1106. Protein 6e-23 45
gbs1948 NP_736381.1 hypothetical protein BAC0125 Protein 1e-27 45
gbs1948 NP_736381.1 hypothetical protein BAC0308 Protein 5e-27 43
gbs1948 NP_736381.1 hypothetical protein HE999704.1.gene1528. Protein 8e-21 43
gbs1948 NP_736381.1 hypothetical protein NC_002952.2859905.p0 Protein 9e-39 42
gbs1948 NP_736381.1 hypothetical protein NC_009782.5559369.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein NC_002951.3237708.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein NC_002745.1124361.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein NC_009641.5332272.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein NC_013450.8614421.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein NC_007793.3914279.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein NC_002758.1121668.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein NC_007622.3794472.p0 Protein 9e-39 42
gbs1948 NP_736381.1 hypothetical protein NC_003923.1003749.p0 Protein 1e-38 42
gbs1948 NP_736381.1 hypothetical protein CP001918.1.gene5135. Protein 4e-22 42
gbs1948 NP_736381.1 hypothetical protein BAC0111 Protein 3e-29 42
gbs1948 NP_736381.1 hypothetical protein NC_011586.7046392.p0 Protein 8e-26 42
gbs1948 NP_736381.1 hypothetical protein NC_010410.6002907.p0 Protein 8e-26 42
gbs1948 NP_736381.1 hypothetical protein HE999704.1.gene2815. Protein 7e-36 41
gbs1948 NP_736381.1 hypothetical protein NC_012469.1.7686381. Protein 6e-33 41
gbs1948 NP_736381.1 hypothetical protein NC_012469.1.7685629. Protein 2e-35 41
gbs1948 NP_736381.1 hypothetical protein AE000516.2.gene3505. Protein 5e-30 41
gbs1948 NP_736381.1 hypothetical protein NC_009085.4919120.p0 Protein 6e-26 41
gbs1948 NP_736381.1 hypothetical protein BAC0347 Protein 5e-28 41
gbs1948 NP_736381.1 hypothetical protein CP000647.1.gene4257. Protein 5e-22 41
gbs1948 NP_736381.1 hypothetical protein BAC0533 Protein 5e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gbs1948 NP_736381.1 hypothetical protein VFG0596 Protein 1e-27 46