Gene Information

Name : gbs1672 (gbs1672)
Accession : NP_736107.1
Strain : Streptococcus agalactiae NEM316
Genome accession: NC_004368
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator CsrR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1730878 - 1731567 bp
Length : 690 bp
Strand : -
Note : Similar to two-component response regulator

DNA sequence : 
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTCTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGAGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGTGGTA
GTTTCCGTGATTTGTCATTAAATACTCATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTGTTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Protein sequence : 
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-36 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gbs1672 NP_736107.1 DNA-binding response regulator CsrR HE999704.1.gene1528. Protein 1e-56 59
gbs1672 NP_736107.1 DNA-binding response regulator CsrR AE015929.1.gene1106. Protein 1e-48 54
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_010079.5776364.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_002952.2859858.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_007622.3794948.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_003923.1003417.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_013450.8614146.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_002951.3238224.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_007793.3914065.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_002758.1121390.p0 Protein 3e-51 53
gbs1672 NP_736107.1 DNA-binding response regulator CsrR NC_012469.1.7685629. Protein 9e-40 43
gbs1672 NP_736107.1 DNA-binding response regulator CsrR BAC0125 Protein 1e-36 42
gbs1672 NP_736107.1 DNA-binding response regulator CsrR AE016830.1.gene1681. Protein 6e-41 41
gbs1672 NP_736107.1 DNA-binding response regulator CsrR BAC0197 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gbs1672 NP_736107.1 DNA-binding response regulator CsrR VFG1390 Protein 2e-41 44
gbs1672 NP_736107.1 DNA-binding response regulator CsrR VFG0596 Protein 3e-36 43
gbs1672 NP_736107.1 DNA-binding response regulator CsrR VFG1389 Protein 3e-37 43