Gene Information

Name : SO_4428 (SO_4428)
Accession : NP_719949.1
Strain : Shewanella oneidensis MR-1
Genome accession: NC_004347
Putative virulence/resistance : Virulence
Product : two component signal transduction system response regulator OmpR family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4619145 - 4619822 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATACTTTTAGTTGAAGATGATGCGACAACGATTGATTACATCGTTAAAGGATTTCTTGAGCAGGGACATAATAT
TGAAACCGCCAGTGATGGTCACCAAGGACTACTGCAAGCCACGAGTGGCCAGTATGATCTGTTGATCCTCGACCGCATGT
TGCCTCAACTCGATGGTTTAAAACTCTTGGCCGCCCTCAGGGCTACTGGCAATCAAACCCCAGTATTGATCCTGTCGGCG
CTTGCCCATGTGGATGAACGGGTAAAAGGTCTGCGCGCAGGCGGCGATGATTATATGACAAAGCCCTTTGCTTTTTCGGA
GCTGTTAGTGCGTGCCGAAAAGCTGATGCAACGGGGCCAATCCACGCCCATTACCACAGATTTAGTGGTTGGCGGATTAA
AAATGGAGCTGCTAACCCGCAACGTAACCTTAGATGGCCACGATTTAATGTTACAGCCCAAAGAATTCCAACTGCTTAAG
TACCTGATGGAACATGCTAATCAGGTTATTAGTCGCACGTTATTATTCGAAGCCGTGTGGGATTATCACTTCGATCCTCG
CACCAATGTGATTGATGTGCATATTGCAAAATTACGCCGTAAATTTGAAGAGTTAGGCCACGGTGAGTTGATTGAAACCG
TAAGGGGAGCGGGTTATCGCTTACGCCAAAGGCATTAA

Protein sequence : 
MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQLDGLKLLAALRATGNQTPVLILSA
LAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQSTPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLK
YLMEHANQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-42 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-41 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family BAC0083 Protein 9e-43 45
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family BAC0197 Protein 5e-40 43
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family BAC0347 Protein 2e-43 43
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family BAC0111 Protein 2e-46 43
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family BAC0638 Protein 2e-39 43
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family BAC0308 Protein 6e-43 42
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family BAC0125 Protein 1e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family VFG0596 Protein 3e-42 45
SO_4428 NP_719949.1 two component signal transduction system response regulator OmpR family VFG1389 Protein 2e-36 44