Gene Information

Name : catB (SO_4299)
Accession : NP_719824.1
Strain : Shewanella oneidensis MR-1
Genome accession: NC_004347
Putative virulence/resistance : Resistance
Product : chloramphenicol O-acetyltransferase CatB
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : 2.3.1.28
Position : 4477624 - 4478256 bp
Length : 633 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAACTATTTTGAGACCCCGTTTAAAGGGAAGCCTCTCAGCGAACAGGTCAAGAATCCCAATATTAAGGTTGGCCG
TTATAGTTACTATTCAGGCTATTATCACGGCCACTCATTTGATGATTGTGCTCGCTATCTTTTGCCAGATCGTGATGACG
TTGATAAATTGATTATTGGTAGTTTTTGCTCGATAGGCTCTGGTGCTTCTTTTATTATGGCTGGCAATCAAGGACATAGG
CATGATTGGGTGACATCATTCCCTTTTTTCTACATGAATGAGGAGCCTGCATTTTCAGAAGCTGTTGATACATTTCAAAC
CACTGGCGATACCGTGATTGGAAATGATGTGTGGATTGGTTCAGAAGCGATGATTTTGCCTGGCGTCAAGGTTGGCCACG
GCGCGGTGATAGGGAGTCGCGCCTTGGTGACAAAAGATGTAGAGCCTTACACTATTGTTGGCGGAAATCCAGCAAAACCA
ATAAAGAAGCGGTTTTCAGAACAGGAAATTTCAATGTTGTTGGAAATGGCGTGGTGGGACTGGCCATTAGAGCAAATTGA
ACAAGCTATGCCTCTTTTGTGTTCATCTGATATAGCAGGCCTTTACCGCATCTGGCAAAGTTCAAACGCTTAA

Protein sequence : 
MKNYFETPFKGKPLSEQVKNPNIKVGRYSYYSGYYHGHSFDDCARYLLPDRDDVDKLIIGSFCSIGSGASFIMAGNQGHR
HDWVTSFPFFYMNEEPAFSEAVDTFQTTGDTVIGNDVWIGSEAMILPGVKVGHGAVIGSRALVTKDVEPYTIVGGNPAKP
IKKRFSEQEISMLLEMAWWDWPLEQIEQAMPLLCSSDIAGLYRIWQSSNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 4e-76 82
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 6e-76 82
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 6e-76 82

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB AY123251.gene2.p01 Protein 1e-76 82
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB AY740681.1.gene5.p01 Protein 3e-76 82
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB AF322577.2.gene4.p01 Protein 3e-76 82
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB NC_002516.2.878374.p Protein 8e-74 75
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB JF268688.1.gene6.p01 Protein 2e-64 72
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB AM180355.1.gene2499. Protein 2e-32 48
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB CP001581.1.gene990.p Protein 1e-38 47
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB NC_010410.6000796.p0 Protein 1e-25 42
catB NP_719824.1 chloramphenicol O-acetyltransferase CatB NC_011595.7057349.p0 Protein 1e-25 42