|
Name : topB (SO_3061) Accession : NP_718626.1 Strain : Shewanella oneidensis MR-1 Genome accession: NC_004347 Putative virulence/resistance : Unknown Product : DNA topoisomerase III TopB Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 3175744 - 3177852 bp Length : 2109 bp Strand : - Note : - DNA sequence : ATGATCCTCTATATTGCCGAAAAACCAAGTCTTGGGCGTGCTATTGCCGATGTGTTGCCAAAACCCCATAAAAAGGGTGA AGGTTTTATTGAAGACGCAAACGGTAACTGTGTGTCTTGGTGTGTAGGACATTTACTCGAACAGGCCGAGCCTGATGCCT ATAATCCCGACTTTAAGTCGTGGAAATTTGAGCATTTACCCATAGTGCCTGAAAAGTGGCAGCTCAAACCTAAGGCTGCG ACCCGCAGCCAACTTACTGTACTGAAAAAATTAATCAAGCAGGCTGATACCTTAGTTAATGCGGGTGATCCTGATCGAGA AGGCCAGTTATTGGTTGATGAAGTGATTGCCTATTTGGGGGTCACCGGTGATAAGTTGCAGCAAACGCAGCGACTCCTTA TCAGCGACTTAAACCCTCAGGCGGTTAAGCGTGCCTTGTCGCAACTGCGCAGTAACCGTGAGTTTATTCCTTTGTCGACT TCGGCATTAGCGCGCAGCCGCGCCGACTGGCTCTATGGCATGAATATGACGCGAGCCTACACCATCCAAGGGAAAAAGGT GGGTTATCAGGGCGTGCTATCTGTAGGACGTGTGCAAACCCCGCTCCTAGGGCTTATTGTTCGCCGTGATGAGGAAATCG CCCATTTTCAATCTAAACCCTTCTATGAAGTTTTGGCTCACTTAGTCACGGATAAACAGCAATTTTTTAGTGCTAAATGG CAACCTAGCGAAGCCTGTCAACCCTATATGGACGATGAAGGTCGTGTTCTTTCGAAGGGATTGGCACAAAATGTGGTTCG AAGAATTACCGATAAACCGGCCAAAGTGACCCAGTTAAGCACTAAGGATAAGCAGCAAAGTGCTCCCTTACCTTACAGTT TATCGGCACTGCAAATTGATGCGGCCAAGCGGTTTGGGATGAGCGCCAAGGAGGTTCTTGATACCTGCCAGAGTTTATAT GAGCGCCATAAACTGATTACCTATCCACGCTCCGATAGTCGTTATCTGCCTACCGAGCAACATGGGCTGGCAAGTTCAGT GTTAAACGCTATTACATCGGGTGCGCCCGAGTTAGTTGCCCACTCTGAGGCACCGAATCCTCGGCTTAAATCTAAGGCGT GGGATGATAAAAAAGTCGATGCCCACCATGCCATTATCCCAACGGAAAAACAGCCTAATTTAGGCAGTTTAAGTCAGCGG GAAAGACAGCTTTATCTGCATATTGCCCGACAGTATTTGGCGCAGTTTTACCCTGCCTATTGCTACAGTGAAACGGCGGT TGAAGTGACGATTGAAGGTGGCCTCTTTAAAACGAAGGCAAGACAGGATAAGTCCCTTGGGTGGAAACAGTTGTTTGCTA GAGAAGAGGGCGAGCGAAAAGACACTTCGAACACAGAGACCTTTGCACAAGACGACAAGGATAAAGATGAAGGGGAATAT GCTGGCCAGTTACCGCCTCTCATCTTAGGGCAAGTTCTTCATTGTAACCAAGGAGAATTGGTCGAGAAGCAAACCCAGCC GCCTAAAGCTTTTACCGATGCCACCTTACTGGGCGCCATGACGGGGATTAATCGCTATGTAACTGATCCTGAGATCCGTA AAATTTTAAAAGAAACCGATGGACTAGGAACTGAAGCGACTCGAGCAGGGATTATCGAGTTGCTGTTTAAACGGGGCTTT ATTCAGCGTCAGGGTAAGTCGATTGTTGCAACTGAGGTGGGAAAAGGCTTAATTAATAGCCTGCCACTTAGCGCCACTAC ACCTGATATGACGGCATTATGGGAGGCAAGCCTTAATGGTATTTGCCACAAAGACATCTCCTATCAAGGATTTATGCAGC CACTGCTAGGGACGCTTCATTCGTTGATCCAAAATGCTGGCGCCCAATTACCCTCAGCCCTCAATGGCCTAAAAGGACAG GGTTTTAAGCGTGCCGCTACTAAAAAGTCCGGTTATCGAAAAGCGGGAGTCAGAGGCGCTGCTGGCGGGAAAAAAGCTGG AACGGGCGCTAAAAATGCTAGAAATTCAGCCGCAGCATCTTCCACATCCACAACAGCTAAACCGACCGTCCCTAGACGGC GAACGAGCAAAGCGACCGCCCAAGCCTGA Protein sequence : MILYIAEKPSLGRAIADVLPKPHKKGEGFIEDANGNCVSWCVGHLLEQAEPDAYNPDFKSWKFEHLPIVPEKWQLKPKAA TRSQLTVLKKLIKQADTLVNAGDPDREGQLLVDEVIAYLGVTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLST SALARSRADWLYGMNMTRAYTIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIAHFQSKPFYEVLAHLVTDKQQFFSAKW QPSEACQPYMDDEGRVLSKGLAQNVVRRITDKPAKVTQLSTKDKQQSAPLPYSLSALQIDAAKRFGMSAKEVLDTCQSLY ERHKLITYPRSDSRYLPTEQHGLASSVLNAITSGAPELVAHSEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLGSLSQR ERQLYLHIARQYLAQFYPAYCYSETAVEVTIEGGLFKTKARQDKSLGWKQLFAREEGERKDTSNTETFAQDDKDKDEGEY AGQLPPLILGQVLHCNQGELVEKQTQPPKAFTDATLLGAMTGINRYVTDPEIRKILKETDGLGTEATRAGIIELLFKRGF IQRQGKSIVATEVGKGLINSLPLSATTPDMTALWEASLNGICHKDISYQGFMQPLLGTLHSLIQNAGAQLPSALNGLKGQ GFKRAATKKSGYRKAGVRGAAGGKKAGTGAKNARNSAAASSTSTTAKPTVPRRRTSKATAQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 6e-102 | 41 |
