Gene Information

Name : ybbA (SO_2927)
Accession : NP_718497.1
Strain : Shewanella oneidensis MR-1
Genome accession: NC_004347
Putative virulence/resistance : Resistance
Product : putative ABC-type fatty acid export system ATPase component YbbA
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 3059556 - 3060317 bp
Length : 762 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTAACGTCGTTTCAAAAAATAGTGCCATCAATGTTGTTAACCTCGAAAAATCGGTGACTACTCAGGAAGGTTCGCT
CACTATCCTCAAGGGCATTAACTTAGATGTCAAGCAGGGGGAAAGTGTGGCGATATTAGGGCCATCCGGCTCGGGTAAAT
CGACGTTACTTGGCTTACTCGCCGCGCTCGACACCCCAACAGCGGGGGAGATTTGGCTCGATGGCGAGGCCCTATCACCG
CTCAATGAAGAACAAAAAGCGGCGCTGCGTAAGCAGAAAGTGAGCTTTATTTTTCAATCCTTTATGTTGGTCGACACTTT
AACAGCCCTTGAGAATGTGATGCTGCCAGCCGAACTTGCTGGGGTTAAAAATGCTAAGGAAAAGGCCGAGGCTATGCTTG
GGCGGGTTGGTTTATCCCACCGTTTGACCCATTTACCCAAGCAGTTGTCCGGTGGCGAGCAGCAAAGGGTCGCGATTGCT
CGCGCTTTTATCTGTGAACCCAAAGTGCTGTTTGCCGATGAACCCACGGGCAATTTGGACAGTGTTAATGGCCATAAAAT
TGCCGATATGTTGTTTGAACTTAACCAAGAGAACCACACAACGCTTATCCTCGTGACCCATGATTTACAACTGGCGAAAC
GCTGCCAACGGCAACTCGTTATGGATAACGGCCACTTACAGGAGAACGAGCACCCGAATGCGTTGCAATCCAACAGTGCC
TGTGAAAGTAACAGCATAACTGCCAGCGCCAAGGAGGCTTAA

Protein sequence : 
MSNVVSKNSAINVVNLEKSVTTQEGSLTILKGINLDVKQGESVAILGPSGSGKSTLLGLLAALDTPTAGEIWLDGEALSP
LNEEQKAALRKQKVSFIFQSFMLVDTLTALENVMLPAELAGVKNAKEKAEAMLGRVGLSHRLTHLPKQLSGGEQQRVAIA
RAFICEPKVLFADEPTGNLDSVNGHKIADMLFELNQENHTTLILVTHDLQLAKRCQRQLVMDNGHLQENEHPNALQSNSA
CESNSITASAKEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-24 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-25 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA NP_718497.1 putative ABC-type fatty acid export system ATPase component YbbA NC_012469.1.7686878. Protein 2e-33 48
ybbA NP_718497.1 putative ABC-type fatty acid export system ATPase component YbbA NC_008702.1.4606598. Protein 1e-31 45