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Name : gspF (SO_0168) Accession : NP_715810.1 Strain : Shewanella oneidensis MR-1 Genome accession: NC_004347 Putative virulence/resistance : Virulence Product : T2aSS secretion system inner membrane platform protein GspF Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 175981 - 177204 bp Length : 1224 bp Strand : + Note : - DNA sequence : ATGCCAGCATTTGAATATAAGGCGCTGGACGCCAAAGGAAAGCAGCTTAAAGGCGTGATCGAAGCGGATACCGCCAGACA CGCCCGCAGCCAGCTGCGCGATCAACGCTTGATGCCGCTGGACATTCTGCCGGTTACTGAAAAAGAAGCCAAGGCCAAAA GCAGTGGCTTTGCTTTATTTAAGCGGGGAATCTCGGTCGCTGAACTCGCGCTGATCACCCGTCAAATCGCCACCTTAGTG GCTGCGGGGTTGCCGATTGAGGAATCCCTTAAAGCAGTCGGGCAGCAGTGTGAGAAAGACCGTCTGGCCAGTATGATCAT GGCGGTGCGCTCACGCGTTGTTGAAGGCTATAGTCTGGCCGATTCCTTAGCCGAATTTCCGCATATTTTCGATGACTTGT ACCGCGCGATGGTGGCCTCGGGAGAAAAATCCGGTCACTTGGAAGTGGTACTTAATCGTTTAGCCGATTACACCGAACGT CGTCAGCAGCTTAAATCTAAACTGCAACAGGCGATGATTTACCCCATTATGCTGACACTTGTCGCCATTGGTGTGGTGTC TGTATTGTTAGCGGCTGTGGTGCCTAAAGTGGTTGGGCAATTTGAACATATGGGAGCAGAGTTACCCGCCACCACCCGCT TTTTAATTGCAGCCTCTGACTTTGTGCAAAATTACGGCCTGCTTGTGGTCTTGGTTCTGGGTATTTTGCTGGTGGTGTTC CAGCGTTTACTCAAGTCACCGATTTTCAAAATGAAATTCCATACATTTTTACTGAAAATGCCGGTGATTGGCCGAGTGAG TAAGGGATTAAATACCGCGCGATTTGCCCGAACCTTAAGTATTTTATCTGCCAGTTCTGTGCCCTTGTTAGATGGGATGC GCATTGCCAGTGAAGTGTTGCAAAATATGCGCGTGCGTGCGGCGGTGGATGATGCCACGGCGCGCGTACGGGAAGGAACT AGCTTAAGCACTGCGTTGACTAACACTAAGCTGTTTCCGGCGATGATGTTATATATGATCGCCTCGGGGGAGAAGAGTGG TCAGCTCGAAGATATGCTTGAGCGCGCGGCAGATAACCAAGATCGGGAGTTCGAGAGTAATGTTACGCTCGCCCTCGGCG TATTCGAACCCATGTTAGTGGTGAGCATGGCGGGGGTTGTACTCTTTATCGTTATGGCCATTCTGCAACCTATCTTGGCA CTGAACAATTTGATTAGTGGCTAG Protein sequence : MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRLMPLDILPVTEKEAKAKSSGFALFKRGISVAELALITRQIATLV AAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLADSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTER RQQLKSKLQQAMIYPIMLTLVAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNYGLLVVLVLGILLVVF QRLLKSPIFKMKFHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQNMRVRAAVDDATARVREGT SLSTALTNTKLFPAMMLYMIASGEKSGQLEDMLERAADNQDREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILA LNNLISG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 2e-98 | 57 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-97 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | NP_715810.1 | T2aSS secretion system inner membrane platform protein GspF | VFG2049 | Protein | 2e-96 | 57 |
| gspF | NP_715810.1 | T2aSS secretion system inner membrane platform protein GspF | VFG0181 | Protein | 3e-92 | 49 |
| gspF | NP_715810.1 | T2aSS secretion system inner membrane platform protein GspF | VFG1870 | Protein | 2e-81 | 45 |
