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Name : gspD (SO_0166) Accession : NP_715808.1 Strain : Shewanella oneidensis MR-1 Genome accession: NC_004347 Putative virulence/resistance : Virulence Product : T2aSS secretion system secretin GspD Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 172301 - 174415 bp Length : 2115 bp Strand : + Note : - DNA sequence : ATGAATAACAAACGGATTCGACGCAAACTGATTGCTGGAGTTGTGGCGGGCGCCACCATGCTGACCTCGCAATTTGTTTG GTCTGAACAATATGCGGCCAACTTTAAGGGCACAGATATTCAAGAATTTATCAATATTGTTGGTAAAAATCTGAATAAAA CCATTATCGTTGACCCAACAATTCGCGGCAAGATCAACGTTCGCAGCTATGATCTACTCAATGATGAGCAATACTATCAA TTTTTCCTCAACGTGCTGCAAGTGTACGGTTATGCCATCGTCGAGATGGAAAATAACGTTATCAAAGTCATCAAAGATAA AGATGCGAAAACGGCAGCGATTCGTGTTGCCAATGACAATGACCCAGGTCTGGGTGATGAAATGGTTACCCGTATCGTGG CGCTGTATAACACAGAGGCTAAGCAATTAGCGCCGTTATTACGTCAGTTAAACGATAACGCTGGTGGTGGAAACGTTGTT AACTACGACCCTTCAAACGTGCTGATGCTGTCTGGTCGCGCTGCGGTCGTAAACAAGCTAGTGGAAATCATTCGCCGAGT CGATAAACAGGGTGATACCTCTGTACAAGTAGTGCCGCTCGAATATGCCTCTGCCGGTGAAATGGTACGAATTATCGATA CTCTGTACCGCGCAACCGCTAACCAATCGCAGCTTCCAGGTCAAGCGCCCAAAGTGGTGGCCGATGAGCGGATTAACGCT GTCGTCGTGAGTGGTGACGAAAAGAGCCGCCAACGTGTGGTTGAGTTGATCCACCGTCTCGATGCTGAACAAGCCAGCAC GGGTAACACTAAGGTACGTTATTTACGTTATGCCAAGGCCGAAGACTTAGTTGAAGTGTTAACTGGCTTTGCGCAGAAGC TCGAAAGCGAAAAAGATCCGAGCGCTCAAGCTGCAGGTGGTGGTAAACGTCGTAATGAAATTAATATTATGGCCCACACC GACACTAACGCATTAGTGATCAGTGCTGAGCCGGACCAAATGCGCACCATTGAGAGCGTCATCAACCAACTCGATATTCG TCGTGCTCAGGTACTCGTAGAAGCCATTATCGTGGAAGTCGCCGAAGGCGATAACGTGGGCTTTGGTGTGCAATGGGCCG CCAAAGCTGGTGGTGGTACTCAGTTTAATAACTTAGGCCCAACTATTGGTGAAATTGGCGCGGGTATTTGGCAGGCGCAG GATAAAGAAGGTACTTACATTACGAACCCGAGCACGGGTGAGGTGATTGGCCAAAACCCCAAAACCAAGGGTGATGTGAC CTTATTGGCGCAGGCCTTAGGTAAAGTGAATGGTATGGCATGGGGCGTTGCCATGGGTGACTTTGGTGCCTTAGTACAAG CGGTCTCCGCCGATACCAACTCAAACGTACTGGCAACGCCTTCGATTACCACCTTAGATAACCAAGAAGCTTCCTTCATC GTCGGTGACGAAGTGCCCATTCTGACGGGTTCTACCGCCAGTTCAAACAACAGTAACCCATTCCAAACCGTTGAGCGTAA AGAGGTTGGGGTGAAGTTAAAAGTGGTGCCACAGATTAACGAAGGCAACGCGGTTAAACTCGCCATTGAGCAGGAAGTCT CCGGCGTAAACGGTAACACTGGGGTGGATATTTCCTTCGCGACACGCCGGTTAACTACCACTGTTATGGCCGATTCAGGC CAAATCGTGGTACTCGGTGGTTTGATTAACGAAGAAGTCCAAGAAAGTATCCAGAAAGTGCCATTCCTTGGTGATATTCC GATACTCGGACACTTATTCAAATCCTCTTCTAGCAAGAAGACCAAGAAAAACCTGATGATCTTCATCAAGCCCACCATCA TCCGTGATGGTGTGACGATGGAAGGTATCGCGGGTCGCAAATATAACTATTTCAGAGCGTTGCAGCTTGAACAGCAAGAG CGTGGTGTCAATTTAATGCCTGATACTAAAGTGCCGGTATTAGATGAGTGGAACCAGTCTGAGTACTTGCCACCTGAAGT GAACGATATTTTAGAGCGTTACAAAGAAGGCAAAGGGTTAGAGACTCAGATGCGTAAAACTGACCCGACCCTCAAGTCGT TGGATGAAAACAAAAACAAAGATAAAACACAATGA Protein sequence : MNNKRIRRKLIAGVVAGATMLTSQFVWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQYYQ FFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDNDPGLGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVLMLSGRAAVVNKLVEIIRRVDKQGDTSVQVVPLEYASAGEMVRIIDTLYRATANQSQLPGQAPKVVADERINA VVVSGDEKSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLESEKDPSAQAAGGGKRRNEINIMAHT DTNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGIWQAQ DKEGTYITNPSTGEVIGQNPKTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVSADTNSNVLATPSITTLDNQEASFI VGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNGNTGVDISFATRRLTTTVMADSG QIVVLGGLINEEVQESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIRDGVTMEGIAGRKYNYFRALQLEQQE RGVNLMPDTKVPVLDEWNQSEYLPPEVNDILERYKEGKGLETQMRKTDPTLKSLDENKNKDKTQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-146 | 52 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 3e-154 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | NP_715808.1 | T2aSS secretion system secretin GspD | VFG2047 | Protein | 9e-145 | 52 |
