Gene Information

Name : intA (SO_1471)
Accession : NP_717087.1
Strain : Shewanella oneidensis MR-1
Genome accession: NC_004347
Putative virulence/resistance : Unknown
Product : CP4-57-like prophage integrase IntA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1536629 - 1537876 bp
Length : 1248 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAAGACTTACTAAGCCGTTATCTGATACAGAAATAAAAACAGCCAAACCAAAGGATAAGGAATACAACCTTGCCGA
TGGTGGCGGACTACAGATCAGAATTAAGCCTAATGGCTCGAAGCTCTGGCTACTAAACTATTCACACCCAATAACGAAAA
AGCGTCAAAACCTGAGTCTTGGCACCTATCCAGATATTTCATTATTATCTGCTCGTAAACTCGCACAAGAAGCTCGAACT
CTCTTAGCGCATGGCACAGACCCTAAAGCCCATAGAGAAGCACAGATTGCCGCTAAAGCAGCCATCATAGAACATACTTT
TGGTAAAATTGCTGCCGAGTGGTTTGAGCGGAAAAAAGATGAGGTTACAGAAGATCATGCAGCAGCTACTTGGCGCTCTT
TTAAGCTGCACTTACTACCCTCACTTAAAGACATCCCAATAAGTCAAATTACTGCGCCTATGGTTATTGAATTCTTAAGA
CCAATAGAAGCCAAAGGTAATTTAGAAACAGTAAAACGACTCACCCAAAGGTTAAACGAGGTGATGATCTATGCCGTAAA
TACAGGGCTAATACATGCCAATCCCCTATCAGGTATTAAGGCTATTTTCAAAAAACCTCGTAAAGAACACTTAGCAGCCT
TGAAGCCAGATGAGTTACCGGAGTTAATGCAAGCTATTGCCAACGCAAGTATTAAAAAAGTGACTCGCTTTTTAATTGAA
TGGCAACTGCACACTATGACTAGACCAAACGAAGCCGCCGCTGCTCGTTGGGATGAAATCAATTTTGATGAGCGTATTTG
GCTTATTCCTGCAGCAAGAATGAAAATGCGCCGAGATCACCAGATCCCACTAACAGAACAAACTTTAGCCCTCCTAGCAG
CAATTAAGCCTATATCGGGACACAGAGAATATATTTTCCCTGCTGATAGAGATCCAAAAACTCACAGCAATGTACAAACG
GCTAATGCTGCATTAAAACGCATGGGCTTAAAAGACAGAACTACAGCGCATGGTTTTAGGTCTCTAGCAAGTACCACACT
CAATGAGCAGGGCTTTGATCCTGATGTAATCGAAGCAGCGCTCGCTCACACGGATAAAAATCAAGTACGCAGTGCCTATA
ACCGCAGTATTTACCTTGACCGCCGACGAGAAATGATGACCTGGTGGAGTAACTACATAGTGGAAGCAGCTAAAGGGAAC
GTCAGTCTTGCGCATAATGCCAGAAATTTAAGGCTTGTAGCTCAATAA

Protein sequence : 
MARLTKPLSDTEIKTAKPKDKEYNLADGGGLQIRIKPNGSKLWLLNYSHPITKKRQNLSLGTYPDISLLSARKLAQEART
LLAHGTDPKAHREAQIAAKAAIIEHTFGKIAAEWFERKKDEVTEDHAAATWRSFKLHLLPSLKDIPISQITAPMVIEFLR
PIEAKGNLETVKRLTQRLNEVMIYAVNTGLIHANPLSGIKAIFKKPRKEHLAALKPDELPELMQAIANASIKKVTRFLIE
WQLHTMTRPNEAAAARWDEINFDERIWLIPAARMKMRRDHQIPLTEQTLALLAAIKPISGHREYIFPADRDPKTHSNVQT
ANAALKRMGLKDRTTAHGFRSLASTTLNEQGFDPDVIEAALAHTDKNQVRSAYNRSIYLDRRREMMTWWSNYIVEAAKGN
VSLAHNARNLRLVAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 4e-125 63
int AAK20803.1 integrase Not tested VPI Protein 4e-125 63
unnamed AAA82714.1 integrase Not tested VPI Protein 4e-125 63
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 6e-125 63
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 6e-125 63
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 2e-107 56
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 2e-107 56
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 5e-112 55
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-107 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intA NP_717087.1 CP4-57-like prophage integrase IntA VFG1092 Protein 9e-108 56