|
Name : SO_1408 (SO_1408) Accession : NP_717028.1 Strain : Shewanella oneidensis MR-1 Genome accession: NC_004347 Putative virulence/resistance : Unknown Product : helicase Function : - COG functional category : K : Transcription COG ID : COG1061 EC number : - Position : 1462814 - 1465777 bp Length : 2964 bp Strand : - Note : - DNA sequence : ATGATAGAACAACAAACCTCACTCTACTCAGGCAAAAAACTGTCCTACGGCGGTGCAAACGATCCCTTGCTACCAAGGCT GATCCAAGCCATTAATCACGCCAGTGAAATCGAAATTTCCGTCTCGTTTATCCAACCGTCAGGTCTCGATTTACTGTTTG ATCCGCTGCTTGATGCCTTACAAAGTGGTGCGAGCTTAAAACTGCTAACGTCGGATTATCTCTGCATCAGCCATCCTGTT GCCCTGCGCCGTTTGATGCTACTGGCCGAACGTGGTGCCCAGTGCAAAATATTTGTGTGCGGCCAGCAAAGCTTTCATAT GAAGTCGTACATTTTTATCCGTAGTGAGCAGGATGAAATAATCGAAGGTTGCGCATGGATAGGCTCTAATAACATCAGTA AAACCGCGTTATTACACAGCCATGAATGGGCCTTACGCCATGATTTTGAGCTGCCACTCACCTCACCCGCAGCGCTTGAG TTTGCCCATATCCGTAAGCAGTTTGAGGCGATTTTTAACCACACTGAGAGTCAGGTGCTGACCCATGTGTGGATCGACAG CTACCTTAGTCGCTACCAACACACGAAGCAACAACGGGGGATTGCCGCCGTTAGTCTTTACGAAGAACAAGAACATATCG AGCCGCCAACGCCCAATGCCGTACAAATGGAGGCATTAGCAGCACTGAAGGCGAGCCGTGAACAGGGTTTCACCAGAGGA TTAGTAGTACTGGCAACGGGCATGGGCAAAACCTGGTTGGCCGCATTTGATACCCTGCAAACTGCAGCCAAAAAGGTACT ATTTGTTGCCCACCGAGAAGAGATCCTTATTCAAGCGGAAAAGACCTTTAACCAATTGGTGCCTGAAGCAAAAACAGGTT CGTATAATGGCTTGAATCAAGATGAAAAGACGGACTATCTGTTTGCATCGGTAGCCACCCTTGGCAAGCTACAGCATCTA CAGCGCTTTGCTGCCGATCATTTCGATTATATTGTGGTGGACGAATTCCATCACGCGGCAGCCAAAAGCTATCGCCAACT GCTGGCCTATTTTCGTCCCCAATTTCTCCTTGGTTTAACCGCCACACCAGAGCGTTCGGATCAAGCGGATATCCTTAGTT TATGCGATAACAATCTGGTGTTTGAACGCAATCTAGTGCATGGCATTGATGGGAAGTTACTGGTGCCGTTTGATTATCAC GGCATTTACGATCAAGCGGTCAATTATCAAGACATCCCTTGGCGAAACGGCAAGTTTGATCCCGATGCTTTGGATAATGC CCTTGCCACCCAACGCCGCGCAACCCATGTTCTGCATCATTGGCAGCAGAGTAAGCAAAGTCGCACCTTAGCCTTTTGTG TCTCCAAAAAACATGCTGACTTTATGGCCAAGTATTTCACCAGCAAAGGCATTAACGCCATCGCCGTTTACAGCGACTCA AAAGTGCGCCGTAATCAAGCACTGCAATGGTTAGCGCAAGGAAGTATCGAGGTTATTTTCTCTGTCGATTTATTTAATGA AGGCACGGATCTGCCAGCGATTGATACGATTTTGATGATCCGTCCAACCGAGTCAAAAATCCTGTTTTTGCAGCAGTTAG GTCGAGGGTTGCGTCTTAGCCATCAAACCCAAAAGCAAAAACTGGTTGTGCTTGATTTTATTGGTAATCACGAGTCATTT TTAAATCGGCCGACAACACTGTATAACCTTGGCAGTCTGCGGGAAGTATTAAGAAATCTCAATCAAGTCAACGCGCTACC CAAAGGTTGTCATGTCAATTTTGATCTGGAACTGATTGAGTTTTGGCAAAACTTAGTTAAACGGTTGCGCTTTTCTGTGC AAGAAGAATATCAACAACTTGCGAACCAGTTAGCCCATCGTCCCACCGCCAGCGAGTTTTACCATCACGGGGTTGAGATG AATAAAGTGCGTCAACAAGCACAAAGCTGGTTCCACCTCGTGGCCAGCCAAGAGGCTGAGCCGTGCTTCACGGATATGGT GACGCGTTATGGTGATTTTTTGCTGCATGGAGTTGAAACCACCACCATGACAAAATCCTTCAAAGCCATTTTGCTCGAAG CCCTGCTCGAACTCGATGGTTTACGCAATCCGCCCACGCTTGCGGCACTTGCTGAACGTAGTCATGCTGTATTTTGTCGC AGACCCGATTTAATGGCGCAGGAATTAACGCAGGCCGCCAAGCAATTTAAGGCTCAGGATAAAGGCTGGTTAACTTATTG GAAAAACAACCCAATTAACGCTTTTACAAAGGCCAATAGTAAAACACCGCCGTGGTTTCAAATAGACGCTAAGCAGCGTT TTGTGGCTACATTTACGATAGATGAAGCGGATATCGAACTGCTGCATGACTGGGTACAAGAGCTAGTCGATTTGCGTTTA GCACAATATGTGCAACGCCCGCAGCAAAAAGCCACGGTGAACACGAGCAATGCCAGCACTAACAACACCAGAAATACCAA CACGACAGCAAAACCACTGGCGCAGGTGTTGCCTTTTGAGTCAACGCCATCAACAGAAGGAACATTGTTGCCCTTCTATC CTGAACTGAAAATCGCCTGTGGCCACTTTAAGCACGGTTCAGCACAAAATGCTGAGCACTATTGCGTCCCTTCTGGCTAC GGTTTGCTTGATCCGAAACGGCACTTTGTTGCCCCCGCGTCTGGCAATTCGATGAATGGGGGTAAAAATCCAATTCAAGA TGGCGATTTATTGCTGCTGGAATGGGTCACGCCAGAGAGCGCAGGGTCTATCTCTAACTTGACCATGGCAATCGAAACCC AAGACGATACGGGTGATAACCAGTATTTGCTCCGCGTTGTTAGAAAAACAGCGCCGAATCAATATGAGTTGCACGCCCAA AATCCAGCCTATCAAACGATGTTAGCCACGGACTCAATGAAAACCTTTGCGCGCTTAAAAGCCGTTCTAGAAAGCCAAGA TTAG Protein sequence : MIEQQTSLYSGKKLSYGGANDPLLPRLIQAINHASEIEISVSFIQPSGLDLLFDPLLDALQSGASLKLLTSDYLCISHPV ALRRLMLLAERGAQCKIFVCGQQSFHMKSYIFIRSEQDEIIEGCAWIGSNNISKTALLHSHEWALRHDFELPLTSPAALE FAHIRKQFEAIFNHTESQVLTHVWIDSYLSRYQHTKQQRGIAAVSLYEEQEHIEPPTPNAVQMEALAALKASREQGFTRG LVVLATGMGKTWLAAFDTLQTAAKKVLFVAHREEILIQAEKTFNQLVPEAKTGSYNGLNQDEKTDYLFASVATLGKLQHL QRFAADHFDYIVVDEFHHAAAKSYRQLLAYFRPQFLLGLTATPERSDQADILSLCDNNLVFERNLVHGIDGKLLVPFDYH GIYDQAVNYQDIPWRNGKFDPDALDNALATQRRATHVLHHWQQSKQSRTLAFCVSKKHADFMAKYFTSKGINAIAVYSDS KVRRNQALQWLAQGSIEVIFSVDLFNEGTDLPAIDTILMIRPTESKILFLQQLGRGLRLSHQTQKQKLVVLDFIGNHESF LNRPTTLYNLGSLREVLRNLNQVNALPKGCHVNFDLELIEFWQNLVKRLRFSVQEEYQQLANQLAHRPTASEFYHHGVEM NKVRQQAQSWFHLVASQEAEPCFTDMVTRYGDFLLHGVETTTMTKSFKAILLEALLELDGLRNPPTLAALAERSHAVFCR RPDLMAQELTQAAKQFKAQDKGWLTYWKNNPINAFTKANSKTPPWFQIDAKQRFVATFTIDEADIELLHDWVQELVDLRL AQYVQRPQQKATVNTSNASTNNTRNTNTTAKPLAQVLPFESTPSTEGTLLPFYPELKIACGHFKHGSAQNAEHYCVPSGY GLLDPKRHFVAPASGNSMNGGKNPIQDGDLLLLEWVTPESAGSISNLTMAIETQDDTGDNQYLLRVVRKTAPNQYELHAQ NPAYQTMLATDSMKTFARLKAVLESQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A0337 | YP_001216293.1 | DEAD/DEAH box helicase | Not tested | VPI-1 | Protein | 0.0 | 75 |
