Gene Information

Name : tnpA (SO_1244)
Accession : NP_716867.1
Strain : Shewanella oneidensis MR-1
Genome accession: NC_004347
Putative virulence/resistance : Unknown
Product : ISSod3 transposase TnpA_ISSod3
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1294326 - 1295540 bp
Length : 1215 bp
Strand : -
Note : -

DNA sequence :
GTGCAAGTGTTAACTATCTTACATCAATCTCTCTATCAACATTGTCCAGAAATCCATCAAAAGCGACTGAATACACTCAT
GGTCGCCTGCAAAGCCCTCATCAACGCGGATTGTCTCACCCTCACGCATTTAGGGCGGCACATTGATGGCACCAGCACTC
ATACTAAACACTCAATAAAACGCATGGATAGATTATTGGGCAACCCGCACCTTCACCATGAAAGACTGGCTGTTTATCAG
TGGCATGCAAAGTGGCTGCTAACAGCACATACGATGCCGACCATACTGGTGGATTGGTCTGATATGCGTGAAGGTCGTGA
ACTGATTGCACTACGCGCCTCTATTGCGATTAAGGGCCGCTCTATCACGCTCTACGAGCGAACATTTCCGTTAGTACTAC
AAGGCACACAAACTGCCCATAATCAGTTTCTGAATGAACTCCATAAAGTGTTACCTGACAATATTACCCCGCTGATAGTC
ACTGACGCGGGCTTCCGTAATCCATGGTTTCGAAAAGTCGAGCAGCTCGGTTGGTATTGGCTGGGTCGTGTCAGAGGATT
AAGTGTCTATCGGCTGCACCCCTTCGGTCGCCAATTTTCGCTAAAAGCGCTTTATCCCAAAGCCAGTCGTCGCGCAAAAC
ATGTTGGGCGAGTGGCGTTATCGGTAAAGAAACCCTTGTTATGCGAGATGGTATTGTTCAGGGCTCCAAGTAAAGGCAGA
AAAGGTCAGCGAAGTACGACAACAGACTGTCACCATACGGCGCAATGGACGTATGAACTGACCGCCAAAGAGCCTTGGGC
ACTGGTGACCAACTTGACCATAGAAGCCATGTCGCCTCAAAAACTGGTTAATATTTACCAAAAACGGATGCAAATAGAAG
AAACCTTTAGAGATTTAAAAAGCCCCGCTTATGGCTTTGGTTTACATCATAGCAGAACACGTTATGCGGCGAGGATGGAC
ATACTGCTATTGATAGCATTATTGGTACAACTGGCATTTTGGTGGGTAGGATTATACGGAGAAACACAGCAATTACAGCG
GCACTTCCAAGCCAACACGGTAAAGAAAAGGAATGTGCTATCAACAATCAGGATGGGCAAAGAACTGCTGCGGCGACGGC
ATGACTACCCCATATCAGCAGATGATTTGCTTTGTGCTGCGAAGAAACTAGCCCAACTCTCATTAACTCATGGTTGTTGG
GGCTATGAATTATGA

Protein sequence :
MQVLTILHQSLYQHCPEIHQKRLNTLMVACKALINADCLTLTHLGRHIDGTSTHTKHSIKRMDRLLGNPHLHHERLAVYQ
WHAKWLLTAHTMPTILVDWSDMREGRELIALRASIAIKGRSITLYERTFPLVLQGTQTAHNQFLNELHKVLPDNITPLIV
TDAGFRNPWFRKVEQLGWYWLGRVRGLSVYRLHPFGRQFSLKALYPKASRRAKHVGRVALSVKKPLLCEMVLFRAPSKGR
KGQRSTTTDCHHTAQWTYELTAKEPWALVTNLTIEAMSPQKLVNIYQKRMQIEETFRDLKSPAYGFGLHHSRTRYAARMD
ILLLIALLVQLAFWWVGLYGETQQLQRHFQANTVKKRNVLSTIRMGKELLRRRHDYPISADDLLCAAKKLAQLSLTHGCW
GYEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp AEA34664.1 IS10 transposase Not tested Not named Protein 2e-95 56
tnp AEA34674.1 IS10 transposase Not tested Not named Protein 2e-95 56
IS10 CAI43894.1 transposase for IS10 Not tested LEE Protein 8e-96 56
SF2983 NP_708757.1 iso-IS10R ORF Not tested SHI-1 Protein 8e-96 56
IS1999 CAJ77042.1 Insertion sequence Not tested AbaR1 Protein 7e-93 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpA NP_716867.1 ISSod3 transposase TnpA_ISSod3 VFG0647 Protein 4e-96 56