|
Name : clpA (LA_0391) Accession : NP_710572.1 Strain : Genome accession: NC_004342 Putative virulence/resistance : Virulence Product : ATP-dependent protease ClpA Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 385170 - 387710 bp Length : 2541 bp Strand : - Note : - DNA sequence : ATGCTGGAATTTACAAAAAGAGCTAAAAGAGTCATCAACGAGATTGCTCAGGATGAGGCGAAGCGTCTTGGTAGCGATTA TATCGGACCAGAGCACATTCTGCTTGGTCTTCTGAAAGAAGAAGATTCGGTCGCTATCAAAATCCTGAACAACCTCAACA TTAACCTCAATGAATTGCGTAAAGAGGTAGAAAGAAGAACGCGGGAAGCGTCCGGAGCCTTGCTCATGGACGTAGCCGGT GGTCAAGATCGTTATCAAAAAATCATTGAACTCTCCAAAGAAGAGGCAAAACGTCTCAAACATAACTATGTGGGAACGGA ACACATCCTTCTTGCATTGCTTAGAGATAATAATAACATTGCAGGTGGAGCTCTTTATTCTTTTAGCGTAAATTATAATG TTATAAAAAGCGAAATCTTGCGTTTGCTCGGAGCTCCTCCTACGAGTTCCGTAGGTGTAAGTTCCACTACACAATCAGGT CCTCAACCTCGTCAGGAAAAAACCAAAACTCCCATCTTGGATGAATTTGCTCGGGATTTAACTCAACTTGCAAGAGACAA AAAGTTAGATCCAGTTGTAGGAAGGGCTACTGAAATACAAAGAGTGATTCAAATTCTTTCCAGAAAAACCAAGAACAACC CCGTTCTAGTAGGAGAATCCGGAGTCGGTAAAACCGCAATCGTAGAAGGACTTGCACTTGCAATCGTAGAAAAAAGTGTT CCTGATCTTTTATTTGAGAAAAGAGTTCTTTCTTTGGATCTTGCGTCTTTGATCGCTGGAACTAAATACAGGGGAGAATT TGAAGAACGTCTGAAAAAGATCATGAAAGAAATTACTTCTTCCACGAATATCATCATCTTTATAGATGAACTTCATACTC TGATCGGAGCCGGTGCAGCGGAAGGGGCTGTGGATGCTGCTAATATTCTCAAACCTGCTTTAGCAAGAGGAGAATTACAA TGTATCGGTGCCACTACAAGCGCTGAATATAGAAAATACATCGAAAAAGATTCCGCATTAGAAAGAAGATTCCAAGTCGT GAAAGTGGCGGAACCTTCCGTAGACGATGCGATCCAAATTTTACAAGGACTCAAAAAAGCTTACGAAACTCATCATAAGG TGAGATATTCTGATAAGGCTTTGGAACAATCCGTAAAACTTTCTCATAGATATATCAACGATCGTTATCTACCTGACAAA GCGATTGATATTATCGACGAAGCAGGAGCTAAAGCGCGTTTGGCGAATTGTGCTCGTCCACAAACGATCAAGGATCTGGA AGAAGAAATCAAATCTCTTGCTTCTAAAAAAGAAGAACTGGTCCGTGCTCAAGAATACGAAAAAGCAGCTGGCGTTCGAG ACGAAGTGAATCGTAAAAAACAAGCAATGGAAGAAAAACTTCGTTCTTGGCAAGAGAAGATGGAAGACTTTGCGGTTAAT ATCGAAGAAGACGATATTCTCTCAGTAATTTCTTTATGGACCGGTATTCCTTTGGAAAAAATGGAAGAATCCGAATCCGA TAAACTACTTCGTTTAGAAGAAGAGTTGAAAAAACGAGTCGTAGGTCAAGCCGAAGCAATCGAAAAAATCGCAAAAGCAG TTCGTCGCGCTAGAACTGGTTTTAAGAGTGAAAGACGCCCTACCGGTTCTTTTATTTTCTTGGGACCGACCGGTGTGGGT AAGACAGAACTGGCAAAAGCTCTCGCAAACTTTCTATTCGGCAACGACGACGCAATGCTTCGTGTAGATATGTCTGAATA CATGGAACCTCACGCAGTAAGCCGTTTAATCGGAGCTCCTCCAGGCTATGTAGGTTATGACGACGGAGGTCAACTGACCG AATTTGTTAGAAAAAGACCTTATTCCATCATCCTTTTGGATGAGATTGAAAAAGCTCATCACGACATTTTCAACATTCTA CTCCAGATTATGGAAGAAGGAAACTTAACCGATACGAAAGGACGAAAAGTCAATTTCAGAGATACGATCATCATCATGAC TTCCAACATAGGCGCAAAAGAAATTCAAGCCGGAGGAAGACTTGGATTTGAAGATCGTAAAGATGAAGCGTTGAAATACA AGTCTGATCAAACCAGGGATCAATTGAAAAAATATTTCAACCCAGAATTCTTAAACCGTGTCGACGAAGTCATTTACTTC GGATCTCTCACCAAAGAAAACATCATGTCCATCATAGATATTATGGTGATCGATACGAACAAAAGGCTTCATGAAAAAAC GATTCAAATTTCCATTACTCAAGCGGCAAAAGATCATATCATGGATATTGGCTACGACGAGAAATTTGGAGCGAGACCTC TTAGAAGAGTTTTCCAAAGAGAGTTAGAAGATCACATGGCGGTTCAAACTCTCAAAGGCGCTTACAAGGAACCTACAAAA ATCGAAATCGATTTTAAAGAAGGCAAACTTGAATTCCTAGAAACTCCGTGGACTGACTATAAACCGGTTGATCCTAAAAC CGGAGGGAACGACAATTCTTCCGGCAATCCTGAAAGGTCGGAAGAAATTGCCTTAGTTTAA Protein sequence : MLEFTKRAKRVINEIAQDEAKRLGSDYIGPEHILLGLLKEEDSVAIKILNNLNINLNELRKEVERRTREASGALLMDVAG GQDRYQKIIELSKEEAKRLKHNYVGTEHILLALLRDNNNIAGGALYSFSVNYNVIKSEILRLLGAPPTSSVGVSSTTQSG PQPRQEKTKTPILDEFARDLTQLARDKKLDPVVGRATEIQRVIQILSRKTKNNPVLVGESGVGKTAIVEGLALAIVEKSV PDLLFEKRVLSLDLASLIAGTKYRGEFEERLKKIMKEITSSTNIIIFIDELHTLIGAGAAEGAVDAANILKPALARGELQ CIGATTSAEYRKYIEKDSALERRFQVVKVAEPSVDDAIQILQGLKKAYETHHKVRYSDKALEQSVKLSHRYINDRYLPDK AIDIIDEAGAKARLANCARPQTIKDLEEEIKSLASKKEELVRAQEYEKAAGVRDEVNRKKQAMEEKLRSWQEKMEDFAVN IEEDDILSVISLWTGIPLEKMEESESDKLLRLEEELKKRVVGQAEAIEKIAKAVRRARTGFKSERRPTGSFIFLGPTGVG KTELAKALANFLFGNDDAMLRVDMSEYMEPHAVSRLIGAPPGYVGYDDGGQLTEFVRKRPYSIILLDEIEKAHHDIFNIL LQIMEEGNLTDTKGRKVNFRDTIIIMTSNIGAKEIQAGGRLGFEDRKDEALKYKSDQTRDQLKKYFNPEFLNRVDEVIYF GSLTKENIMSIIDIMVIDTNKRLHEKTIQISITQAAKDHIMDIGYDEKFGARPLRRVFQRELEDHMAVQTLKGAYKEPTK IEIDFKEGKLEFLETPWTDYKPVDPKTGGNDNSSGNPERSEEIALV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-180 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | NP_710572.1 | ATP-dependent protease ClpA | VFG0079 | Protein | 0.0 | 53 |
| clpA | NP_710572.1 | ATP-dependent protease ClpA | VFG0080 | Protein | 6e-150 | 53 |
