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Name : ycbS (SF0941) Accession : NP_706863.2 Strain : Shigella flexneri 301 Genome accession: NC_004337 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 986284 - 988884 bp Length : 2601 bp Strand : + Note : Code: N; COG: COG3188 DNA sequence : ATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT GTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATT TGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGAT ACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT GGGTGTTAATACTGATGCGTTTCCGGCTTTTAAACAACTGGACAAACAAGTGTGTGTGCCATTGGCGGAGATTATTCCGG ATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGT GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTAT TCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT TACGCAACAATTCAACATGGAGTCGCAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCAGCAGCTATTTGCAGCGGGCG GTTATTCCACTAAAAGGCGAACTGACCGTAGGTGATGATTATACTGCAGGCGATTTTTTCGATAGTGTCAGCTTTCGTGG TGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCCTGAAAGGGTTTGCGCCTGTGGTGCGTGGTATCGCCAAAA GCAATGCCCAGATAACGATTAAGCAAAATGGTTACACCATTTACCAAACTTATGTATCGCCTGGTGCTTTTGAAATTAGT GATCTCTATTCCACGTCGTCGAGCGGTGATTTGTTAGTTGAAATCAAAGAAGCGGACGGCAGCGTCAATAGCTACAGCGT ACCGTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATA GTAATGAACAGCAGGAGAGCAAATTTGCCCAGACCACGTTGCAGTGGGGCGGACCGTGGGGAACGACATGGTATGGTGGT GGACAATATGCTGAATATTACCGTGCCGCCATGTTTGGTCTGGGATTTAACCTTGGCGATTTCGGAGCAATTTCGTTCGA TGCGACCCAGGCGAAGAGTACGCTGGCAGACCAAAGCGAACATAAAGGTCAGTCATATCGTTTTCTGTATGCCAAAACGC TCAACCAATTGGGCACTAATTTTCAATTGATGGGCTATCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACCATG TATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTT TTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCC AGCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTCTCGCTG GGGGTTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCACTAAATTTTTCCCTGCCGCT CAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCG ATAACGAAGGGCACATTACACAAAACCTGGGTTTAACGGAGACACTACTCGATGACGGTAACCTGAGCTACAGCGTGCAA CAGGGATATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGCATGGACTACAAAGGGGCGTTTGCAGATGCCCGAGT GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTGAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAGG GCATTACCCTGGGGCAATCGCTGGGGGAAACTAACGTGCTGATTGCAGCACCAGGCGCAGAGAATACTCGTGTGGCGAAC AGCACCGGGCTGAAAACTGACTGGCGCGGATATACCGTTGTCCCCTATGCCACTTCTTATCGGGAAAATCGAATCGCACT TGATGCGGCATCGTTAAAACGTAACGTGGATCTTGAAAATGCAGTAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTC TGGCGGAGTTCAATGCCCATGCGGGAGCAAGGGTATTAATGAAAACATCAAAGCAGGGTATACCGCTGCGTTTTGGCGCG ATAGCGACGCTGGACGGCATACAGACTAATAGCGGCATTATTGATGATGATGGCTCGCTCTATATGTCCGGTTTGCCCGC TCAGGGAGCGATAACTGTACGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAGTTACCAGCTTACCGAACAACAAA TTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAA Protein sequence : MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQVCVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQTTLQWGGPWGTTWYGG GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA IATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAITRMDAICR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 48 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ycbS | NP_706863.2 | outer membrane usher protein | VFG0876 | Protein | 0.0 | 49 |
| ycbS | NP_706863.2 | outer membrane usher protein | VFG0446 | Protein | 7e-180 | 49 |
| ycbS | NP_706863.2 | outer membrane usher protein | VFG1645 | Protein | 0.0 | 46 |
| ycbS | NP_706863.2 | outer membrane usher protein | VFG0912 | Protein | 0.0 | 46 |
| ycbS | NP_706863.2 | outer membrane usher protein | VFG0454 | Protein | 1e-169 | 45 |
