Gene Information

Name : yhcI (SF3258)
Accession : NP_709015.4
Strain : Shigella flexneri 301
Genome accession: NC_004337
Putative virulence/resistance : Virulence
Product : NAGC-like transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1940
EC number : -
Position : 3355570 - 3356478 bp
Length : 909 bp
Strand : -
Note : Code: K; COG: COG1940

DNA sequence : 
GTGGTACAACACAGCGATGAAAAAGGCGGTGCTATGACCATACTGGCGATTGATATCGGCGGTACTAAACTTGCCGCCGC
GCTGATTGGCGCTGACGGGCAGATCCGCGATCGTCGTGAACTTCCTACGCCAGCCAGCCAGACACCAGAAGCCTTGCGTG
ATGCCTTATCCGCATTAGTCTCTCCGTTGCAAGCTCATGCGCAGCGGGTTGCCATCGCTTCAACCGGAATTATTCGCGAC
GGCAGTTTGCTGGCGCTGAATCCGCATAATCTCGGTGGATTGCTACACTTTCCGTTAGTCAAAACGCTGGAACAACTTAC
CAATTTGCCGACCATTGCCATTAACGACGCGCAGGCCGCAGCATGGGCAGAGTATCAGGCGCTGGAAGGCGATATAACCG
ATATGGTCTTTATCACCGTTTCCACTGGCGTCGGCGGCGGTGTAGTGAGCGGTGGCAAACTGCTTACCGGCCCTGGCGGT
CTGGCGGGGCACATCGGGCATACGCTTGCCGATCCACACGGCCCAGTCTGCGGCTGTGGACGCACAGGTTGCGTGGAAGC
AATTGCTTCTGGTCGCGGCATTGCGGCGGCAGCGCAGGGCGAGCTGGCTGGCGCGGATGCGAGAACTATTTTCACACGCG
CCGGGCAGGGCGATGAGCAGGCGCAGCAACTGATTCATCGCTCCGCACGTACGCTTGCAAGGCTGATCGCTGATATTAAA
GCCACAACTGATTGCCAGTGCGTGGTGGTTGGTGGCAGCGTTGGTCTGGCAGAAGGGTATCTGGCGTTGGTGGAAATGTA
TCTGGCGCAGGAGCCAGCGGCATTTCATGTTGATTTACTGGCGGCGCATTACCGCCATGATGCAGGTTTACTTGGGGCTG
CGCTGTTGGCCCAGGGAGAAAAATTATGA

Protein sequence : 
MVQHSDEKGGAMTILAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRD
GSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPGG
LAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQGELAGADARTIFTRAGQGDEQAQQLIHRSARTLARLIADIK
ATTDCQCVVVGGSVGLAEGYLALVEMYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGEKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
nanK YP_002414055.1 N-acetylmannosamine kinase Not tested Not named Protein 4e-38 53
VPI2_0030 ACA01847.1 ROK family protein Not tested VPI-2 Protein 1e-26 41
VC1782 NP_231417.1 N-acetylmannosamine kinase Not tested VPI-2 Protein 1e-26 41
VC0395_A1379 YP_001217322.1 N-acetylmannosamine kinase Not tested VPI-2 Protein 1e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yhcI NP_709015.4 NAGC-like transcriptional regulator VFG1115 Protein 6e-27 41