Gene Information

Name : SF0318 (SF0318)
Accession : NP_706270.1
Strain : Shigella flexneri 301
Genome accession: NC_004337
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 331258 - 331620 bp
Length : 363 bp
Strand : -
Note : Code: L; COG: COG2963

DNA sequence : 
ATGCTTCCATCGGAAACGATGATCTGGCAGCCTGAGTTCACAGATAAAACACTCTCCAGGAAACCCGGGGCGGTTCAACG
TTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGATCAGTGAAGGCGCTTCCCGAT
TATCTCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTACTCCTGGTTCCCGCACGCTG
GCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAGCGAGATATATTAAAAAAAGC
AACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence : 
MLPSETMIWQPEFTDKTLSRKPGAVQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTL
AELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09021.1 unknown Not tested SHI-O Protein 1e-37 99
unnamed AAF09029.1 unknown Not tested SHI-O Protein 1e-37 99
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-37 99
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 3e-37 99
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 3e-37 98
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 3e-37 98
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 4e-31 96
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 4e-31 96
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 1e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SF0318 NP_706270.1 IS600 ORF1 VFG1707 Protein 1e-37 99