Gene Information

Name : SF2052 (SF2052)
Accession : NP_707887.1
Strain : Shigella flexneri 301
Genome accession: NC_004337
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2071269 - 2072060 bp
Length : 792 bp
Strand : +
Note : Code: L; COG: COG2801

DNA sequence :
ATGTGTCAGGTATTTGGTGTATCCAGGAGCGGTTATTACAACTGGGTACAGCATGAACCCTCAGACAGAAAACAAAGTGA
TGAGCGGCTAAAACTGGAGATTAAGGTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGC
TGGCAGAGAATGGCATCATCGTTGGTCGTGACCGACTGGCATGTCTTCGTAAGGAGCTGAGGCTACGCTGTAAGCAGAAA
CGCAAGTTCAGAGCGACTACGAACCCGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTAC
AGCACCAAATCAGGTCTGGGTGGCGGACCTGACGTATGTTGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGGCT
ACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTGCC
GGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTCTGGTCTGAA
AACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAGCC
TGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTCAG
CGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGCTTAA

Protein sequence :
MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQK
RKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPA
GLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQ
RRHSRLGNISPAAFREKYHQMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-120 97
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 5e-118 96
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-118 96
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-118 96
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-118 96
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 7e-118 96
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-117 96
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-117 95
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-117 95
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 5e-41 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 5e-41 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 5e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SF2052 NP_707887.1 IS600 ORF2 VFG1706 Protein 3e-118 96