Gene Information

Name : fliP (SF1993)
Accession : NP_707833.3
Strain : Shigella flexneri 301
Genome accession: NC_004337
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2021862 - 2022476 bp
Length : 615 bp
Strand : +
Note : Code: N; COG: COG1338

DNA sequence : 
GTGCAGACGCTGGTGTTCATCACCTCGTTGACGTTCATTCCAGCGATTTTACTGATGATGACCAGTTTCACCCGCATCAT
TATTGTTTTTGGTTTATTGCGTAACGCGCTGGGAACGCCCTCCGCGCCACCTAACCAGGTATTGCTGGGGCTGGCACTGT
TTTTGACCTTTTTTATTATGTCGCCAGTGATCGACAAAATTTATGTCGATGCGTACCAGCCATTCAGCGAAGAGAAAATC
TCAATGCAGGAGGCGCTGGAAAAAGGGGCGCAGCCGCTGCGTGAGTTTATGCTGCGTCAGACCCGCGAGGCAGATTTAGG
GTTGTTTGCCAGACTGGCGAATACCGGCCCGTTGCAGGGGCCTGAAGCTGTGCCGATGCGCATTTTGCTCCCGGCCTACG
TGACCAGCGAGTTGAAAACCGCATTTCAGATAGGCTTCACGATTTTCATCCCTTTTTTGATTATCGACCTGGTGATTGCC
AGCGTGTTGATGGCATTGGGGATGATGATGGTTCCCCCCGCCACCATTGCTCTGCCCTTTAAACTGATGCTGTTTGTACT
GGTGGATGGCTGGCAATTGCTGGTCGGTTCGCTGGCGCAGAGCTTTTACAGCTAG

Protein sequence : 
MQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKI
SMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIA
SVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-29 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-29 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-26 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-26 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-26 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 7e-31 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-30 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-30 42
escR AAC38369.1 EscR Virulence LEE Protein 1e-29 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-30 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-29 42
escR AAK26700.1 EscR Virulence LEE Protein 2e-30 42
escR AAL57527.1 EscR Virulence LEE Protein 2e-30 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-30 42
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-30 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-30 42
escR AAC31528.1 L0049 Virulence LEE Protein 2e-30 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-30 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-22 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-22 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-30 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-30 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP NP_707833.3 flagellar biosynthesis protein VFG2338 Protein 1e-82 85
fliP NP_707833.3 flagellar biosynthesis protein VFG2494 Protein 7e-72 69
fliP NP_707833.3 flagellar biosynthesis protein VFG1259 Protein 4e-63 65
fliP NP_707833.3 flagellar biosynthesis protein VFG2016 Protein 2e-57 58
fliP NP_707833.3 flagellar biosynthesis protein VFG0188 Protein 3e-34 42
fliP NP_707833.3 flagellar biosynthesis protein VFG0394 Protein 3e-31 42
fliP NP_707833.3 flagellar biosynthesis protein VFG0715 Protein 5e-30 42
fliP NP_707833.3 flagellar biosynthesis protein VFG0827 Protein 8e-31 42
fliP NP_707833.3 flagellar biosynthesis protein VFG0519 Protein 9e-31 41
fliP NP_707833.3 flagellar biosynthesis protein VFG0044 Protein 2e-33 41