Gene Information

Name : SF1900 (SF1900)
Accession : NP_707748.1
Strain : Shigella flexneri 301
Genome accession: NC_004337
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1938624 - 1938926 bp
Length : 303 bp
Strand : +
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAACCCGACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGACGCTTCCCGATTATTCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence : 
MSRKTRRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 3e-38 97
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 3e-38 97
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 8e-38 96
unnamed AAF09021.1 unknown Not tested SHI-O Protein 9e-38 96
unnamed AAF09029.1 unknown Not tested SHI-O Protein 9e-38 96
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 5e-38 96
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 5e-32 95
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 5e-32 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SF1900 NP_707748.1 IS600 ORF1 VFG1707 Protein 2e-38 96