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Name : lysS (BL1654) Accession : NP_696804.1 Strain : Bifidobacterium longum NCC2705 Genome accession: NC_004307 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2068918 - 2070600 bp Length : 1683 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCTGAAGTTGTCGAAAATACCGAAAACACTGAGAATGAAACCCCGGCCGTCCCGCAGATGAGCACCGTCGAACGTGC GGAAATGCTGCTCAAGCAGGACGCCACCATCCGCGAGAAGATCAAGTCCGGTGCCACGCTGGACGAAGCCGTGGACCCCT CCAACAAGGAGTTCGGCCCGCTGGCCCACCCCGAGCAGGTGCAGATGCGCGTGGCCAAGCGCGCGATGATGCTTGAGGCC GGCATCGCCCCCTACCCGGTGCACTTGGACGTCACCGACACCATCGAGGCGGTCCGCGCCAAGTATGACGGCAAGCTCGA GGCTGGCGAAGAGACCGAAGACATGGTCGGCATTGCTGGCCGCGTGCTGTTCCTGCGCAACGCGGGCGGCCTGTGCTTCG TGCAGCTGTCCGCCGGTGACGGCACCAAGATTCAGGGCATGATCTCCAAGAAGGAGATTGGCGCCGATTCGCTCAAGCAG TTCAAGCAGCTCGTCGACCTTGGCGATCACTTGTACCTCAAGGGCCGCGTCATCGCCTCCAAGACCGGCGAGCTGTCCGT ATTCGCCACTGAGTGGGCTATCGCCTCTAAGGCCCTGCAGCCGCTGCCGGCCCTGCACAAGGACCTGAACGAAGACACCC GCACCCGCAAGCCGTACATCGGCATGATCGCGGACGAGAACATCCGCAACATGGTGCGCAACCGCTCCAAGGCCGTGGCC TCCCTGCGCCGCACCTTTGACGACCACGACTTCCTCGAGGTCGAAACCCCGATGCTGCAGACCCTGCACGGTGGCGCGGC CGCCCGCCCGTTCACCACGCACATGAACGCCTTCGACCTTGACCTGTACCTTCGCATCGCCCCGGAACTGTTCCTCAAGC GCTGCCTGGTCGGCGGCATCGATCGCGTGTTCGAAATCAACCGTGACTTCCGCAATGAGGGCGTCGACGCCACGCACGCC CCCGAATTCACCATGGTCGAGGCCTACCAGGCCTATGGCACCTATGATTCCATCGGCCAGCTGGTCAAGGAGCTCGTGCA GAAGACCGCCATGGACGTCTACGGCTCGCACAAGGTCACCCTGCTCGACGGCACCGAATACGACTTCGGCGGCGAATGGA AGACCATCAGCATGTACGACTCCCTGTCCGAATCGTTGGGCGAGGAGATCGTGCCGAACGGCGGCCCGGACGCCCCCGGC ACCTCCGTTGAGCACCTGGGCGCCATCGCCGACAAGCTCGGCGTAGAGCGCGACGACGTGGAGAACCACGGCAAGCTCGT CGAACACCTGTGGGAGCACTTCTACGAGGACAAGCTTTACGAGCCCACCTTCGTGCGTGACTTCCCGGTCGAAACCTCCC CGCTGGTCAAGGGCCACCGCACCAAGCCCGGCGTGGTGGAGAAGTGGGATCTCTACGTGCGCGGCTTCGAGCTGGCTACC GGCTACTCCGAGCTCAACGACCCGATCGTGCAGCGTGAACGTTTCGTGGCTCAGGCCAAGGACGCGCTCGCTGGCGACGA AGAGGCTTGCGACATCGATGAGGACTTCCTCGAGGCTCTCGGCGTGGGCATGCCTCCGGCCGGCGGTATGGGTATGGGTA TTGATCGACTGCTTATCGCCTTGACCGGTGCCACGATTCGCGAGACCATCACCTTCCCGCTGGTCAAGCCGCTCGTTGGC TGA Protein sequence : MAEVVENTENTENETPAVPQMSTVERAEMLLKQDATIREKIKSGATLDEAVDPSNKEFGPLAHPEQVQMRVAKRAMMLEA GIAPYPVHLDVTDTIEAVRAKYDGKLEAGEETEDMVGIAGRVLFLRNAGGLCFVQLSAGDGTKIQGMISKKEIGADSLKQ FKQLVDLGDHLYLKGRVIASKTGELSVFATEWAIASKALQPLPALHKDLNEDTRTRKPYIGMIADENIRNMVRNRSKAVA SLRRTFDDHDFLEVETPMLQTLHGGAAARPFTTHMNAFDLDLYLRIAPELFLKRCLVGGIDRVFEINRDFRNEGVDATHA PEFTMVEAYQAYGTYDSIGQLVKELVQKTAMDVYGSHKVTLLDGTEYDFGGEWKTISMYDSLSESLGEEIVPNGGPDAPG TSVEHLGAIADKLGVERDDVENHGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKGHRTKPGVVEKWDLYVRGFELAT GYSELNDPIVQRERFVAQAKDALAGDEEACDIDEDFLEALGVGMPPAGGMGMGIDRLLIALTGATIRETITFPLVKPLVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-136 | 56 |
