|
Name : clpB (BL1250) Accession : NP_696415.1 Strain : Bifidobacterium longum NCC2705 Genome accession: NC_004307 Putative virulence/resistance : Virulence Product : protease of ClpA/ClpB type Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1855630 - 1858299 bp Length : 2670 bp Strand : + Note : ClpB; COG family: ATPases with chaperone activity, ATP-binding subunit; PFAM_ID: Clp_N; PFAM_ID: Clp_N; PFAM_ID: AAA DNA sequence : ATGGAACAGAAGTTCACCACTATGGCCCAAGAAGCCGTCGGCGACGCGATTCAGAGTGCGTCCGCCGCAGGAAACGCGCA GGTCGAGACCCTGCACGTCATGGATGCGCTGCTGCGCCAGGAAAACGGCGTGGCGCGCTCTCTGATCGAGGCCGCGGGCG GGGACCCGCAGGCCATCGGCGCGGCGGTGCGCAACGCTTTGGTCGCGCTGCCGAGCGCATCCGGATCCAGCACCTCGCAG CCACAGGCCAGCCGCCAGCTGACCGCCGCCATCGCCCAGGCTGAGAAGGAAATGCAGCAGATGGGCGACGAATACGTCTC CACCGAACATCTGCTTATCGGCATCGCGGCCAGCAAGCCGAACCAGTCGGCCGAAATCCTGGAGAAGAACGGCGTCACCG CAGCCTCCCTGCGCAAGGCCGTACCCGGCGTGCGTGGTGGCGCGAAGGTCACCAGCCCGGACGCGGAAGGCTCGTACAAG GCCCTGGAGAAGTACTCCACCGACCTGACGGCCGCCGCCAAGGAAGGCAAGCTGGACCCGGTCATCGGACGTGACCAGGA AATCCGCCGCGTGATTCAGATCCTCTCCCGTCGTACCAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGA CCGCCGTCGTGGAAGGCCTGGCCCAGCGTATCGTGGCGGGCGACGTGCCCACCACCCTGCAAGGCAAGAAGCTCATCTCC CTTGACCTAGGCTCCATGGTGGCCGGCTCGAAGTACCGTGGCGAGTTCGAGGAGCGCCTGAAGAGCGTCCTGAACGAAAT CAAGAACGCGGACGGCCAGATCATCACCTTCATCGACGAGATTCACACCATCGTCGGCGCGGGTGCGGCCGAAGGCTCGA TGGACGCCGGCAATATGCTGAAGCCTATGCTGGCCCGTGGCGAGCTGCGCCTGATCGGCGCGACCACGCTGGACGAGTAC CGCGAGAACATCGAAAAGGATCCGGCATTGGAACGCCGTTTCCAACAGGTGTTCGTGGGCGAGCCGAGCGTGGAAGACAC CATCGCCATCCTGCGTGGCCTGAAGCAGCGTTACGAGGCGCACCACAAGGTGACGATCGGCGATGACGCGCTGGTCGCCG CCGCGACCCTCTCGAACCGGTACATCTCAGGCCGTCAGCTGCCGGACAAGGCCATCGACCTGGTCGATGAGGCGGCTGCC CACCTGCGTATGGAGCTCGACTCCTCGCCTGAGGAGATCGATGAGCTGCAGCGCAAGGTGACCCGTCTTGAAATGGAGGA AATGCAGCTCAAGAAGGCCGAGGATCCTGCGTCCAAGGAGCGTCTGGGCAAGCTGCAAGCCGAACTTGCGGACACCCGTG AGAAGCTCAGCGGTCTCAAGGCGCGTTGGGATGCGGAACAGGCTGGCCACAACAAGGTCGGCGACCTGCGTGCCAAGCTC GACGACCTGCGCGTGCAGGCGGATAAGTATACCCGTGAAGGCAACTTGGCGGAGGCCTCGAAGATTCTGTACGGCGAGAT TCCGTCCATTCAGAAGGAGCTTGCCGCCGCGGAGAGCGCGGATGCTGAATCTGCTGATGCCAGCGCGGCCAACCCGGCCG ATGAGCCGATGGTCCCGGACCGTGTGGACGCCGACTCGGTGGCTGAGATCGTCTCCGACTGGACCGGCATTCCCGTCGGC CGCCTGATGCAGGGCGAAAACGAGAAGCTGCTGCACATGGAGGACTACCTCGGCAAGCGTGTGATCGGCCAGAAGGAAGC CATCGCCGCCGTGTCCGACGCGGTGCGCCGTTCGCGTGCCGGCATCTCCGACCCGAACCGTCCGACCGGATCGTTCCTGT TCCTCGGCCCCACCGGTGTGGGCAAGACCGAACTGGCCAAGGCGCTCGCCGACTTCCTGTTCGACGACGAGAAGGCCATG GTCCGCATCGACATGTCCGAATACATGGAGAAGGCTTCGGTCTCGCGCCTGATTGGCGCGGCGCCGGGCTACGTGGGCTA CGAGCAGGGCGGCCAGCTGACCGAGGCCGTGCGCCGTCGCCCGTATTCCGTGGTGCTGTTCGACGAGGTCGAGAAGGCCA ACCCGGAGATCTTCGACGTGCTGCTGCAGGTACTTGACGATGGTCGCCTGACCGATGGCCAGGGAAGGACCGTGGACTTC AAGAACACGATCCTGATTATGACCTCTAACCTCGGCTCGCAGTTCCTCGTGAACGAGGACATGGACGCCGACGCCAAGAA AAAGGCCGTGATGGACGCTGTCCACATGAACTTCAAGCCGGAGTTCCTGAACCGTCTGGACGACATCGTCATGTTCCACC CGCTTACGCGCGAGGAGCTTGGCGGCATCGTGGATATCCAGGTGGCTGGCGTGTCCCAGCGTCTGACCGATCGCCGCATC ACGCTGGACGTCACCGACTCGGCTCGCGAATGGCTTGCCAACACCGGTTACGACCCGGCTTATGGCGCTCGTCCGCTGCG CCGCCTGGTACAGACCGAAGTGGGCGACCAGCTGGCCCGTATGCTGCTGGCCGGCAAGGTCCACGACGGTGACACCGTGC TCGTCGACCAGACCGGCGGCGAACATCTGGAGCTCTCCGCTTGGGCGAGCGACCAGATTGTCTCCGACAATCCGGACGTG AGCGTGGACAACGTCACCGAAGACAAGTGA Protein sequence : MEQKFTTMAQEAVGDAIQSASAAGNAQVETLHVMDALLRQENGVARSLIEAAGGDPQAIGAAVRNALVALPSASGSSTSQ PQASRQLTAAIAQAEKEMQQMGDEYVSTEHLLIGIAASKPNQSAEILEKNGVTAASLRKAVPGVRGGAKVTSPDAEGSYK ALEKYSTDLTAAAKEGKLDPVIGRDQEIRRVIQILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVPTTLQGKKLIS LDLGSMVAGSKYRGEFEERLKSVLNEIKNADGQIITFIDEIHTIVGAGAAEGSMDAGNMLKPMLARGELRLIGATTLDEY RENIEKDPALERRFQQVFVGEPSVEDTIAILRGLKQRYEAHHKVTIGDDALVAAATLSNRYISGRQLPDKAIDLVDEAAA HLRMELDSSPEEIDELQRKVTRLEMEEMQLKKAEDPASKERLGKLQAELADTREKLSGLKARWDAEQAGHNKVGDLRAKL DDLRVQADKYTREGNLAEASKILYGEIPSIQKELAAAESADAESADASAANPADEPMVPDRVDADSVAEIVSDWTGIPVG RLMQGENEKLLHMEDYLGKRVIGQKEAIAAVSDAVRRSRAGISDPNRPTGSFLFLGPTGVGKTELAKALADFLFDDEKAM VRIDMSEYMEKASVSRLIGAAPGYVGYEQGGQLTEAVRRRPYSVVLFDEVEKANPEIFDVLLQVLDDGRLTDGQGRTVDF KNTILIMTSNLGSQFLVNEDMDADAKKKAVMDAVHMNFKPEFLNRLDDIVMFHPLTREELGGIVDIQVAGVSQRLTDRRI TLDVTDSAREWLANTGYDPAYGARPLRRLVQTEVGDQLARMLLAGKVHDGDTVLVDQTGGEHLELSAWASDQIVSDNPDV SVDNVTEDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 8e-102 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_696415.1 | protease of ClpA/ClpB type | VFG2084 | Protein | 4e-109 | 42 |
